Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000049-TA|BGIBMGA000049-PA|IPR012464|Protein of unknown
function DUF1676
         (222 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    27   1.7  
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr...    27   2.2  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   8.9  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   8.9  

>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 455

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%)

Query: 26 FAPKNQDDYANRFNVTDPYSWLFT---QGKFAPRSLQEDL 62
          F  +N + + N   + D +   F+   QGKF PRS+  DL
Sbjct: 35 FPTENSEVHKNNSYLNDGFGTFFSETGQGKFVPRSIYVDL 74


>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 591

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 17/53 (32%), Positives = 20/53 (37%)

Query: 159 VMASVLSLKGMFENSHAYQNRKDDTKTQVEIIQVPTKTEDHVYYDEHYRRGDL 211
           V   VL L+        Y+   D  K QV        T D     EH RRGD+
Sbjct: 128 VAGRVLGLRTAGNKLRFYEIHADGKKLQVMCQAQDADTVDFAAQHEHLRRGDI 180


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 8/30 (26%), Positives = 18/30 (60%)

Query: 179  RKDDTKTQVEIIQVPTKTEDHVYYDEHYRR 208
            R+D++K Q  + +     + H++YD+  +R
Sbjct: 1838 RRDESKDQPTVYKAKLGEKSHLHYDKELKR 1867


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 152  MMGFFSTVMASVLSLKGMFENSHAYQ---NRKDDTKTQVEIIQVPTKTEDHVYYDEHYR 207
            +M F +   A   +LKGMF+N    +   N+   T  Q++I      +E  +Y+DE ++
Sbjct: 2879 LMYFRNRQKAEFFTLKGMFQNRLGEKDEANQAFATAVQIDIGSGKAWSEWGLYHDELFQ 2937


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.135    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 829,115
Number of Sequences: 5004
Number of extensions: 29150
Number of successful extensions: 92
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 89
Number of HSP's gapped (non-prelim): 5
length of query: 222
length of database: 2,362,478
effective HSP length: 70
effective length of query: 152
effective length of database: 2,012,198
effective search space: 305854096
effective search space used: 305854096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)