Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000049-TA|BGIBMGA000049-PA|IPR012464|Protein of unknown
function DUF1676
         (222 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2367| Best HMM Match : HEAT (HMM E-Value=1.1e-07)                   29   2.3  
SB_12834| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_14560| Best HMM Match : Sushi (HMM E-Value=3.6e-35)                 27   9.4  

>SB_2367| Best HMM Match : HEAT (HMM E-Value=1.1e-07)
          Length = 653

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/49 (32%), Positives = 24/49 (48%)

Query: 12  NNNYSIVKTETIFEFAPKNQDDYANRFNVTDPYSWLFTQGKFAPRSLQE 60
           +N+   +KT     F    Q+D+ N    T+P S   T+GK    S+QE
Sbjct: 140 SNSRVALKTLYTLAFKEHPQEDFGNALTTTEPNSKNQTRGKNKKESVQE 188


>SB_12834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1261

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 120  YVMPVILGLLAAKSLLIPIALKALAFVSAK--GLMMGFFSTVMASVLSLKGMFENSHAYQ 177
            +++P+I  L      L    + +  F++A    L +GFF  V    +SL+G   NS+   
Sbjct: 1003 FIIPLIFVLFFGPLKLYRRQISSNMFIAACCFPLPVGFFCLVYCLFMSLRGTQRNSNELS 1062

Query: 178  NRKDDTKTQVEIIQV 192
                + +T+  +++V
Sbjct: 1063 ESYRERETRAAVLEV 1077


>SB_14560| Best HMM Match : Sushi (HMM E-Value=3.6e-35)
          Length = 716

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 152 MMGFFSTVMASVLSLKGMFENSHAYQNRKDDTKTQVEIIQVPTKTE 197
           M+  FS   AS  +++ +++N      R+D T T+ +I++ P KT+
Sbjct: 360 MIAAFSNYPAS--AVQDVYDNCPPKAKRRDKTTTKNKILETPKKTK 403


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.135    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,696,538
Number of Sequences: 59808
Number of extensions: 190702
Number of successful extensions: 326
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 324
Number of HSP's gapped (non-prelim): 4
length of query: 222
length of database: 16,821,457
effective HSP length: 79
effective length of query: 143
effective length of database: 12,096,625
effective search space: 1729817375
effective search space used: 1729817375
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)