Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000049-TA|BGIBMGA000049-PA|IPR012464|Protein of unknown
function DUF1676
         (222 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    21   7.0  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    21   7.0  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    21   7.0  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    21   7.0  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    21   9.2  

>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 13/41 (31%), Positives = 19/41 (46%)

Query: 162 SVLSLKGMFENSHAYQNRKDDTKTQVEIIQVPTKTEDHVYY 202
           S LS K +  N++ Y+  +      +E I VP      VYY
Sbjct: 83  SSLSNKTIHNNNNNYKKLQYYNINYIEQIPVPVPVPVPVYY 123


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 13/41 (31%), Positives = 19/41 (46%)

Query: 162 SVLSLKGMFENSHAYQNRKDDTKTQVEIIQVPTKTEDHVYY 202
           S LS K +  N++ Y+  +      +E I VP      VYY
Sbjct: 83  SSLSNKTIHNNNNNYKKLQYYNINYIEQIPVPVPVPVPVYY 123


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 13/41 (31%), Positives = 19/41 (46%)

Query: 162 SVLSLKGMFENSHAYQNRKDDTKTQVEIIQVPTKTEDHVYY 202
           S LS K +  N++ Y+  +      +E I VP      VYY
Sbjct: 83  SSLSNKTIHNNNNNYKKLQYYNINYIEQIPVPVPVPVPVYY 123


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 13/41 (31%), Positives = 19/41 (46%)

Query: 162 SVLSLKGMFENSHAYQNRKDDTKTQVEIIQVPTKTEDHVYY 202
           S LS K +  N++ Y+  +      +E I VP      VYY
Sbjct: 316 SSLSNKTIHNNNNNYKKLQYYNINYIEQIPVPVPVPVPVYY 356


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 13/41 (31%), Positives = 19/41 (46%)

Query: 162 SVLSLKGMFENSHAYQNRKDDTKTQVEIIQVPTKTEDHVYY 202
           S LS K +  N++ Y+  +      +E I VP      VYY
Sbjct: 83  SSLSNKTIHNNNNNYKKLQYYNINYIEQIPVPVPIPVPVYY 123


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.135    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,057
Number of Sequences: 429
Number of extensions: 1858
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 222
length of database: 140,377
effective HSP length: 55
effective length of query: 167
effective length of database: 116,782
effective search space: 19502594
effective search space used: 19502594
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)