GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000049-TA|BGIBMGA000049-PA|IPR012464|Protein of unknown
function DUF1676
         (222 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0632 - 12413660-12413677,12413839-12413870,12414377-124144...    32   0.43 
02_05_1289 - 35470076-35470243,35471032-35471108,35471935-354719...    31   0.75 
03_05_0531 - 25317446-25317762,25318000-25318160,25318239-253183...    30   1.3  
02_01_0189 - 1273313-1274157,1274595-1275549                           30   1.3  
06_03_0791 - 24641350-24641418,24641684-24641965,24642318-246425...    27   9.2  

>02_02_0632 -
           12413660-12413677,12413839-12413870,12414377-12414494,
           12414794-12414860,12416098-12416237,12416378-12416470,
           12416581-12416643,12418070-12418120,12419508-12419606,
           12419876-12420012,12420121-12420219,12420346-12420523
          Length = 364

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 17/62 (27%), Positives = 36/62 (58%), Gaps = 7/62 (11%)

Query: 135 LIPIALKALAFVSAKGLMMG-------FFSTVMASVLSLKGMFENSHAYQNRKDDTKTQV 187
           L+P+  K+L +++  G ++G       +FST++AS+L   G+ E  H  +  ++D + +V
Sbjct: 192 LLPMGRKSLFYLTIYGSVVGVGSYAVHYFSTLVASILENFGLSEEMHNPETSRNDLRGEV 251

Query: 188 EI 189
            +
Sbjct: 252 GV 253


>02_05_1289 -
           35470076-35470243,35471032-35471108,35471935-35471971,
           35472559-35472618,35472693-35472769,35473244-35473364,
           35473505-35473597,35473708-35473770,35475195-35475245,
           35475384-35475511,35476249-35476343,35476345-35476427,
           35476653-35476808,35477046-35477182,35477243-35477252,
           35477291-35477380,35477771-35478070,35479054-35479120,
           35479382-35479469,35480317-35480373,35480469-35480592
          Length = 693

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 7/62 (11%)

Query: 135 LIPIALKALAFVSAKGLMMG-------FFSTVMASVLSLKGMFENSHAYQNRKDDTKTQV 187
           L+P+  K+L +++  G  +G       +FST++AS+L   G+ E  H  +  ++D + +V
Sbjct: 466 LLPMGRKSLFYLTIYGSAVGVGSYAVHYFSTLVASILENFGLSEEMHNPETSRNDQRGEV 525

Query: 188 EI 189
            +
Sbjct: 526 GV 527


>03_05_0531 -
           25317446-25317762,25318000-25318160,25318239-25318336,
           25318462-25318623,25319707-25319799,25319909-25319971,
           25320549-25320694,25320804-25320961,25321033-25321225,
           25321865-25322093
          Length = 539

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 7/61 (11%)

Query: 121 VMPVILGLLAAKSLLIPIALKALAFVSAKGLMMG-------FFSTVMASVLSLKGMFENS 173
           V+ V+L +L     L+P+  K+L +++  G ++G       +FST++AS+L   G+ E  
Sbjct: 232 VLLVVLIVLFQGMKLLPMGRKSLFYLTIYGSVVGVGSYAVHYFSTLVASILENFGLSEEM 291

Query: 174 H 174
           H
Sbjct: 292 H 292


>02_01_0189 - 1273313-1274157,1274595-1275549
          Length = 599

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 5/81 (6%)

Query: 146 VSAKGLMMGFFSTVMASVLSLKGMFENSHAYQNRKD-DTKTQVEIIQVPTKTEDHVYYDE 204
           + A  + +G    +    L L+ MF+ S A+Q+  D D   +V       +  D ++Y  
Sbjct: 218 LDAAKVSLGVLGVISQVTLKLQPMFKRSVAFQHCGDGDLAERVVAFAGEHEFADILWYPG 277

Query: 205 H----YRRGDLAPLNAPRDNI 221
           H    YR  D  P N P D +
Sbjct: 278 HGKAVYRIDDRVPSNTPGDGV 298


>06_03_0791 -
           24641350-24641418,24641684-24641965,24642318-24642537,
           24642657-24642776,24643056-24643132,24643220-24643339,
           24644121-24644186,24644265-24644479,24645450-24645582,
           24646562-24646708,24647301-24647596,24648222-24648319,
           24648425-24648471,24649340-24649449,24649663-24649735,
           24650795-24650899
          Length = 725

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/48 (29%), Positives = 20/48 (41%)

Query: 157 STVMASVLSLKGMFENSHAYQNRKDDTKTQVEIIQVPTKTEDHVYYDE 204
           ++  AS ++   +F N HAYQN           +  P  T    Y DE
Sbjct: 240 TSTQASGIAPPPLFRNMHAYQNTAGGNAPSKPKVNAPNLTLRRKYIDE 287


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.135    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,750,941
Number of Sequences: 37544
Number of extensions: 151309
Number of successful extensions: 309
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 305
Number of HSP's gapped (non-prelim): 5
length of query: 222
length of database: 14,793,348
effective HSP length: 79
effective length of query: 143
effective length of database: 11,827,372
effective search space: 1691314196
effective search space used: 1691314196
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)