GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000048-TA|BGIBMGA000048-PA|undefined
         (272 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    28   1.6  

>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 728

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/30 (33%), Positives = 19/30 (63%)

Query: 1  MEFKLQWQFVLCFIVMSTADNDYENRLTKL 30
          ++F+L   F+L FI  +   N+YE++ T +
Sbjct: 3  LQFRLYLLFILLFISFANGKNEYEDKSTSI 32


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.133    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 829,198
Number of Sequences: 5004
Number of extensions: 26986
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75
Number of HSP's gapped (non-prelim): 1
length of query: 272
length of database: 2,362,478
effective HSP length: 72
effective length of query: 200
effective length of database: 2,002,190
effective search space: 400438000
effective search space used: 400438000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)