Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000047-TA|BGIBMGA000047-PA|IPR012464|Protein of unknown
function DUF1676
         (178 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26020.1 68417.m03747 expressed protein weak similarity to ca...    29   1.3  
At3g59040.2 68416.m06580 pentatricopeptide (PPR) repeat-containi...    29   1.3  
At3g59040.1 68416.m06581 pentatricopeptide (PPR) repeat-containi...    29   1.3  
At1g13910.1 68414.m01632 leucine-rich repeat family protein cont...    28   3.1  
At5g25800.1 68418.m03062 exonuclease family protein contains exo...    28   4.1  
At1g26470.1 68414.m03228 expressed protein                             28   4.1  
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila...    27   7.1  
At1g14640.1 68414.m01740 SWAP (Suppressor-of-White-APricot)/surp...    27   7.1  

>At4g26020.1 68417.m03747 expressed protein weak similarity to
           cardiac muscle factor 1 [Gallus gallus] GI:14422164
          Length = 247

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 13/49 (26%), Positives = 29/49 (59%)

Query: 64  GVDIVKVSKTDENVPISENEIDAALPRNLQDKNEALTQMLWDKVASFAN 112
           G++ + V ++  NV  S  E+     +NL+++NE L ++  + + +FA+
Sbjct: 26  GLNEINVYRSKSNVESSRREVLEISNKNLKEENERLKKLYTESLNNFAD 74


>At3g59040.2 68416.m06580 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 590

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 3/41 (7%)

Query: 19  DLSYKYLTKVYDECQKSDAILPCLKKKAILF--FDRAARME 57
           + SYK ++K+YD+ Q+SD I P +   A+L   + RA R E
Sbjct: 299 ETSYKEVSKIYDQMQRSD-IQPDVVSYALLIKAYGRARREE 338


>At3g59040.1 68416.m06581 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 583

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 3/41 (7%)

Query: 19  DLSYKYLTKVYDECQKSDAILPCLKKKAILF--FDRAARME 57
           + SYK ++K+YD+ Q+SD I P +   A+L   + RA R E
Sbjct: 292 ETSYKEVSKIYDQMQRSD-IQPDVVSYALLIKAYGRARREE 331


>At1g13910.1 68414.m01632 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Hcr2-0A
           [Lycopersicon esculentum] gi|3894385|gb|AAC78592
          Length = 330

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 16/37 (43%), Positives = 21/37 (56%)

Query: 90  RNLQDKNEALTQMLWDKVASFANSRTIQLALPKMTGA 126
           RNL   N  LT  L +K+A+  N   + L+  KMTGA
Sbjct: 227 RNLFLNNNYLTGGLPNKLANLTNLEILYLSFNKMTGA 263


>At5g25800.1 68418.m03062 exonuclease family protein contains
           exonuclease domain, Pfam:PF00929
          Length = 567

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 15/65 (23%), Positives = 36/65 (55%), Gaps = 6/65 (9%)

Query: 42  LKKKAILFFDRAARMETIPLLDGVDIVK--VSKTDENVPISENEIDAALPRNLQDKNEAL 99
           ++KK +   + + +  T  ++D ++IVK   S++   +P+S +  D AL + +++     
Sbjct: 381 IRKKLLAVLNESGK--TTSIIDNINIVKRYASESSNAIPVSSD--DEALSKAVKEVKNKR 436

Query: 100 TQMLW 104
           +Q +W
Sbjct: 437 SQFVW 441


>At1g26470.1 68414.m03228 expressed protein
          Length = 133

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 50  FDRAARM-ETIPLLDGVDIVKVSKTD-ENVPISENEIDAALPRNLQDKNE 97
           FDR     E + LLD    +++ K+D E++ I  +E D  LP++  DK E
Sbjct: 83  FDRPFTADEVLQLLDRFYNIEMLKSDDEDIDILNHEEDFTLPQSFFDKEE 132


>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
           to RNA helicase [Rattus norvegicus] GI:897915; contains
           Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
           Helicase conserved C-terminal domain
          Length = 760

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 2/48 (4%)

Query: 27  KVYDECQKSDAILPCLKKKAILFFDRAARMETIPL-LDGVDIVKVSKT 73
           K +++C  S  I+  +KK+A      A + + +P+ L G D++ ++KT
Sbjct: 228 KTFEDCGFSSQIMSAIKKQA-YEKPTAIQCQALPIVLSGRDVIGIAKT 274


>At1g14640.1 68414.m01740 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein similar to human splicing
           factor GB:CAA59494 GI:899298 from [Homo sapiens];
           contains Pfam profile PF01805: Surp module
          Length = 735

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 80  SENEIDAALPRNLQDKNEALTQMLWDKVASFANSRTIQLALPKMTGAELNRGV 132
           +E E+  A+  +++ K+E   Q++WD     +  RT   AL + +  E   GV
Sbjct: 469 TEEEVSNAVKADIEKKDEQPKQVIWDGHTG-SIGRTANQALTQNSNGEQGDGV 520


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.134    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,926,641
Number of Sequences: 28952
Number of extensions: 98672
Number of successful extensions: 291
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 287
Number of HSP's gapped (non-prelim): 8
length of query: 178
length of database: 12,070,560
effective HSP length: 77
effective length of query: 101
effective length of database: 9,841,256
effective search space: 993966856
effective search space used: 993966856
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)