GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000047-TA|BGIBMGA000047-PA|IPR012464|Protein of unknown
function DUF1676
         (178 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0646 + 5474234-5476189                                           37   0.008
03_01_0348 + 2739523-2741006,2742046-2742232                           29   2.1  
12_01_0777 - 7095081-7096259,7096636-7096725,7096827-7096902,709...    28   4.9  
02_01_0166 + 1154695-1156569                                           28   4.9  

>12_01_0646 + 5474234-5476189
          Length = 651

 Score = 37.1 bits (82), Expect = 0.008
 Identities = 17/42 (40%), Positives = 29/42 (69%), Gaps = 1/42 (2%)

Query: 63  DGVDIVKVSKTDENVPISENEIDAALPRNLQDKNEALTQMLW 104
           +G++ VK ++ +EN+P  ++ ID A P  ++DK+EAL   LW
Sbjct: 36  EGLEAVK-NRLEENIPKIQSVIDVADPDYIKDKSEALDAWLW 76


>03_01_0348 + 2739523-2741006,2742046-2742232
          Length = 556

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 5/68 (7%)

Query: 22  YKYLTKVYDECQKSDAILPCLKKKAILFFDRAARME----TIPLLDGVDIVKVSKTDENV 77
           Y  ++ +Y+   + +  L CL KK ++F D  + M+    +I    G  ++K  + DE V
Sbjct: 358 YAEMSMLYETMIEFEVAL-CLMKKTLVFLDGVSEMQHIQGSISARMGWLLLKTERVDEAV 416

Query: 78  PISENEID 85
           P  ++ I+
Sbjct: 417 PYLQSAIE 424


>12_01_0777 - 7095081-7096259,7096636-7096725,7096827-7096902,
            7097150-7097367,7097502-7097717,7097922-7098107,
            7098181-7098303,7098399-7098514,7099254-7099832,
            7101485-7101517,7102485-7103679,7103732-7103797,
            7104843-7104905,7105328-7105411
          Length = 1407

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 1/71 (1%)

Query: 36   DAILPCLKKKAILFFDRAARMETIPLLDGVDIVKVSKTDENVPISENEIDAALPRNLQDK 95
            DA++   K       DR    + I L+D     +V      VP    E+D  L +  +DK
Sbjct: 946  DALISAAKLSYQYISDRFLPDKAIDLIDEAGS-RVRLRHAQVPEEARELDKELKQITKDK 1004

Query: 96   NEALTQMLWDK 106
            NEA+    ++K
Sbjct: 1005 NEAVRSQDFEK 1015


>02_01_0166 + 1154695-1156569
          Length = 624

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query: 63  DGVDIVKVSKTDENVPISENEIDAALPRNLQDKNEALTQMLWD 105
           D ++I+   K  +NV +S N +D     NL D+   +   L+D
Sbjct: 467 DLIEIMLERKIRQNVDLSTNLVDTLFRNNLNDRAYKIVTSLYD 509


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.134    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,465,910
Number of Sequences: 37544
Number of extensions: 111814
Number of successful extensions: 318
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 316
Number of HSP's gapped (non-prelim): 4
length of query: 178
length of database: 14,793,348
effective HSP length: 78
effective length of query: 100
effective length of database: 11,864,916
effective search space: 1186491600
effective search space used: 1186491600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)