GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000047-TA|BGIBMGA000047-PA|IPR012464|Protein of unknown
function DUF1676
         (178 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21321-3|AAG00052.2|  655|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U58757-6|AAC47920.1|  656|Caenorhabditis elegans Hypothetical pr...    28   4.3  
Z99281-48|CAB54455.3|  795|Caenorhabditis elegans Hypothetical p...    27   5.7  
Z81470-3|CAB03880.1|  401|Caenorhabditis elegans Hypothetical pr...    27   7.6  

>U21321-3|AAG00052.2|  655|Caenorhabditis elegans Hypothetical
           protein ZK177.4 protein.
          Length = 655

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 8/72 (11%)

Query: 64  GVDIVKVSKTDENVPISENEIDAALPRNLQDKNEALTQM--LWDKVASFANS--RTIQLA 119
           G++++   + DENVP+S+NEI   +   L++  + L+ M  L  K+   +N   R   + 
Sbjct: 557 GINVL-FHRVDENVPLSDNEI--RIFERLKEHQKMLSDMTKLVPKMTLDSNEIHRMANIV 613

Query: 120 LPKM-TGAELNR 130
           L K  TG E NR
Sbjct: 614 LKKRGTGEEQNR 625


>U58757-6|AAC47920.1|  656|Caenorhabditis elegans Hypothetical
           protein C01B10.8 protein.
          Length = 656

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 66  DIVKVSKTDE--NVPISENEIDAALPRNLQDKNEALTQMLWDKV----ASFANSRTIQLA 119
           D   +S  DE   + I +  +DA LP +  + +EAL   ++++V    AS      + LA
Sbjct: 101 DAANLSMADEAHTIVIDKGTLDALLPPSASESDEALVTKMFEEVHRVLASGGRYIIVTLA 160

Query: 120 LPKMTGAELN 129
            P +T   +N
Sbjct: 161 QPHITEFWIN 170


>Z99281-48|CAB54455.3|  795|Caenorhabditis elegans Hypothetical
           protein Y57G11C.32 protein.
          Length = 795

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 5/55 (9%)

Query: 49  FFDRAARMETIPLLDGVDIVKVSKTDENVPISENEIDAALPRNLQDKNEALTQML 103
           F  +A       LLD  DI+K  + D     S+ ++D AL + L   NE L +++
Sbjct: 538 FLKKAGHYHVPDLLDDFDIIKGKEDD-----SKQQVDEALAKQLNLLNERLDRVV 587


>Z81470-3|CAB03880.1|  401|Caenorhabditis elegans Hypothetical
           protein C14A6.3 protein.
          Length = 401

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 55  RMETIPLLDGV-DIVKVSKTDENVPISENEIDAALPRNLQ 93
           R  TI L+DG  D++K+++   N    ENE+   L + L+
Sbjct: 154 RKYTIGLVDGYKDLIKLNRDLSNQWFEENEVTGKLKKQLE 193


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.134    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,077,481
Number of Sequences: 27539
Number of extensions: 106443
Number of successful extensions: 313
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 313
Number of HSP's gapped (non-prelim): 4
length of query: 178
length of database: 12,573,161
effective HSP length: 77
effective length of query: 101
effective length of database: 10,452,658
effective search space: 1055718458
effective search space used: 1055718458
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)