Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000046-TA|BGIBMGA000046-PA|IPR012464|Protein of unknown
function DUF1676
         (314 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    25   0.54 
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    22   6.7  

>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
          protein.
          Length = 590

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 14/36 (38%), Positives = 17/36 (47%)

Query: 61 RLNEYEDSDTFSLATGVALVRDEKTPRDIGTFLDKD 96
          RLN  +   T +LA GV   R E  P    T  D+D
Sbjct: 30 RLNSIKKLSTIALALGVERTRSELIPFLTETIYDED 65


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory
          receptor candidate 40 protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 3  LRLVLLLCFVAGVIPIQLSLQEGEEIN 29
          L+ VLLL  + GV P+    +E E+++
Sbjct: 28 LKKVLLLSQIVGVFPLNHLNEEPEKLH 54


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.136    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,239
Number of Sequences: 317
Number of extensions: 2261
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 2
length of query: 314
length of database: 114,650
effective HSP length: 57
effective length of query: 257
effective length of database: 96,581
effective search space: 24821317
effective search space used: 24821317
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)