Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000046-TA|BGIBMGA000046-PA|IPR012464|Protein of unknown
function DUF1676
         (314 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39627| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.8  
SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.8  
SB_17900| Best HMM Match : CbiQ (HMM E-Value=0.33)                     30   2.8  
SB_48326| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.5  

>SB_39627| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 546

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 255 RPHHEYYYREKSA-ETTTASPITPDELRDRLERLFVTKKEVESSRDDRNARN 305
           R   E+Y +E+S  E     P  PD   D++   F+ K++VES+  D   R+
Sbjct: 281 RSFDEWYNKEQSGYEDNEYDPENPDNCVDKVGFRFIRKQDVESALIDSAQRD 332


>SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 12/34 (35%), Positives = 24/34 (70%), Gaps = 1/34 (2%)

Query: 268 ETTTASPI-TPDELRDRLERLFVTKKEVESSRDD 300
           ++  +SP+  PDE R +LE++ + +KE++S  D+
Sbjct: 149 DSKDSSPVPAPDEFRGKLEKVTIVRKELKSHLDN 182


>SB_17900| Best HMM Match : CbiQ (HMM E-Value=0.33)
          Length = 766

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 255 RPHHEYYYREKSA-ETTTASPITPDELRDRLERLFVTKKEVESSRDDRNARN 305
           R   E+Y +E+S  E     P  PD   D++   F+ K++VES+  D   R+
Sbjct: 554 RSFDEWYNKEQSGYEDNEYDPENPDNCVDKVGFRFIRKQDVESALIDSAQRD 605


>SB_48326| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 264 EKSAETTTASPITPDELRDRLERLFVTKKEVES 296
           E SA  +TASPIT    R R ER +V K+  ES
Sbjct: 2   EMSARVSTASPITFPRYR-RAERFYVGKELTES 33


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.136    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,672,892
Number of Sequences: 59808
Number of extensions: 314967
Number of successful extensions: 684
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 684
Number of HSP's gapped (non-prelim): 4
length of query: 314
length of database: 16,821,457
effective HSP length: 82
effective length of query: 232
effective length of database: 11,917,201
effective search space: 2764790632
effective search space used: 2764790632
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)