Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000046-TA|BGIBMGA000046-PA|IPR012464|Protein of unknown
function DUF1676
         (314 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L42451-1|AAC42010.1|  407|Homo sapiens pyruvate dehydrogenase ki...    34   0.56 
BC063137-1|AAH63137.1|  407|Homo sapiens pyruvate dehydrogenase ...    34   0.56 
BC040478-1|AAH40478.1|  407|Homo sapiens pyruvate dehydrogenase ...    34   0.56 
BC005811-1|AAH05811.1|  407|Homo sapiens pyruvate dehydrogenase ...    34   0.56 

>L42451-1|AAC42010.1|  407|Homo sapiens pyruvate dehydrogenase
           kinase protein.
          Length = 407

 Score = 34.3 bits (75), Expect = 0.56
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 11/55 (20%)

Query: 88  DIGTFLDKDPMDFRSIMEDASNLISKRSLHWDLSAMYPGLVMRIGPTLANGVLEF 142
           DI  FLDKDP D R++ +    L++ R+ H D           + PT+A GVLE+
Sbjct: 94  DIMEFLDKDPEDHRTLSQFTDALVTIRNRHND-----------VVPTMAQGVLEY 137


>BC063137-1|AAH63137.1|  407|Homo sapiens pyruvate dehydrogenase
           kinase, isozyme 2 protein.
          Length = 407

 Score = 34.3 bits (75), Expect = 0.56
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 11/55 (20%)

Query: 88  DIGTFLDKDPMDFRSIMEDASNLISKRSLHWDLSAMYPGLVMRIGPTLANGVLEF 142
           DI  FLDKDP D R++ +    L++ R+ H D           + PT+A GVLE+
Sbjct: 94  DIMEFLDKDPEDHRTLSQFTDALVTIRNRHND-----------VVPTMAQGVLEY 137


>BC040478-1|AAH40478.1|  407|Homo sapiens pyruvate dehydrogenase
           kinase, isozyme 2 protein.
          Length = 407

 Score = 34.3 bits (75), Expect = 0.56
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 11/55 (20%)

Query: 88  DIGTFLDKDPMDFRSIMEDASNLISKRSLHWDLSAMYPGLVMRIGPTLANGVLEF 142
           DI  FLDKDP D R++ +    L++ R+ H D           + PT+A GVLE+
Sbjct: 94  DIMEFLDKDPEDHRTLSQFTDALVTIRNRHND-----------VVPTMAQGVLEY 137


>BC005811-1|AAH05811.1|  407|Homo sapiens pyruvate dehydrogenase
           kinase, isozyme 2 protein.
          Length = 407

 Score = 34.3 bits (75), Expect = 0.56
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 11/55 (20%)

Query: 88  DIGTFLDKDPMDFRSIMEDASNLISKRSLHWDLSAMYPGLVMRIGPTLANGVLEF 142
           DI  FLDKDP D R++ +    L++ R+ H D           + PT+A GVLE+
Sbjct: 94  DIMEFLDKDPEDHRTLSQFTDALVTIRNRHND-----------VVPTMAQGVLEY 137


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.319    0.136    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,086,657
Number of Sequences: 224733
Number of extensions: 1359565
Number of successful extensions: 2475
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2471
Number of HSP's gapped (non-prelim): 4
length of query: 314
length of database: 73,234,838
effective HSP length: 90
effective length of query: 224
effective length of database: 53,008,868
effective search space: 11873986432
effective search space used: 11873986432
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 65 (30.3 bits)