Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000046-TA|BGIBMGA000046-PA|IPR012464|Protein of unknown
function DUF1676
         (314 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    27   0.16 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   0.65 
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     25   0.65 
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   6.0  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   6.0  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   6.0  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 27.5 bits (58), Expect = 0.16
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 256 PHHEYYYREKSAETTTASPITPDELRDRLERLFVTKKEV 294
           PHHEYY  + S ET  +         + +ER F +K  V
Sbjct: 525 PHHEYYDSKSSTETPPS--YNQLNYNENIERFFKSKPPV 561


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 25.4 bits (53), Expect = 0.65
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 6/60 (10%)

Query: 14  GVIPIQLSLQEGEEIN-ENVVQGSK-----LNECLNDRRGAEVGVCFGKELINRLNEYED 67
           GV  ++  L   +++N +++V G +     L++C ND  G E+ V F K  I+ ++  ED
Sbjct: 142 GVQALEAMLYTLDKLNTQDIVPGVRIGAHILDDCDNDTYGLEMSVDFIKGSISNIDGAED 201


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 25.4 bits (53), Expect = 0.65
 Identities = 9/14 (64%), Positives = 10/14 (71%)

Query: 256 PHHEYYYREKSAET 269
           PHHEYY  + S ET
Sbjct: 223 PHHEYYDSKSSTET 236


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 69  DTFSLATGVALVRDEKTPRDIGTFLDK 95
           D   LATG+ + R+      +GT  D+
Sbjct: 288 DGIVLATGITVHRNSAQQAGVGTIFDR 314


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 69  DTFSLATGVALVRDEKTPRDIGTFLDK 95
           D   LATG+ + R+      +GT  D+
Sbjct: 288 DGIVLATGITVHRNSAQQAGVGTIFDR 314


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/28 (28%), Positives = 16/28 (57%)

Query: 21  SLQEGEEINENVVQGSKLNECLNDRRGA 48
           +L +GE++   ++Q  K +  LN  + A
Sbjct: 84  ALYKGEQVAAKIIQTEKYSNMLNSEKHA 111


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.136    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,484
Number of Sequences: 429
Number of extensions: 2748
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 6
length of query: 314
length of database: 140,377
effective HSP length: 58
effective length of query: 256
effective length of database: 115,495
effective search space: 29566720
effective search space used: 29566720
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)