Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000046-TA|BGIBMGA000046-PA|IPR012464|Protein of unknown
function DUF1676
         (314 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g06120.1 68415.m00672 hypothetical protein contains Pfam prof...    31   1.3  
At2g39990.1 68415.m04914 eukaryotic translation initiation facto...    30   2.3  
At5g15180.1 68418.m01778 peroxidase, putative similar to peroxid...    28   7.1  

>At2g06120.1 68415.m00672 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 473

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 3/62 (4%)

Query: 29  NENVVQGSKLNECLNDRR--GAEVGVCFGKELINRLNEYEDSDTFSLATGVALVRDEKTP 86
           N+N V G    E   D+   G+E+GVC G + + +  E  +S+       + + +D++ P
Sbjct: 362 NKNDVDGDN-REMEKDKEVAGSEIGVCSGNKEMEKGKEVAESEIEVCGGNMEMEKDKEVP 420

Query: 87  RD 88
           +D
Sbjct: 421 QD 422


>At2g39990.1 68415.m04914 eukaryotic translation initiation factor 3
           subunit 5 / eIF-3 epsilon / eIF3f (TIF3F1) identical to
           SP|O04202 Eukaryotic translation initiation factor 3
           subunit 5 (eIF-3 epsilon) (eIF3 p32 subunit) (eIF3f)
           {Arabidopsis thaliana}; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 293

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/53 (28%), Positives = 30/53 (56%)

Query: 16  IPIQLSLQEGEEINENVVQGSKLNECLNDRRGAEVGVCFGKELINRLNEYEDS 68
           IP+ L + + E +  +V++ + +++  ND  G E+ +     LIN + +Y DS
Sbjct: 172 IPVDLRMVDAERVGFDVLKATSVDKLPNDLEGMELTMERLLTLINDVYKYVDS 224


>At5g15180.1 68418.m01778 peroxidase, putative similar to peroxidase
           ATP12a [Arabidopsis thaliana] gi|1429217|emb|CAA67311
          Length = 329

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 5/72 (6%)

Query: 47  GAEVGVCFGKELINRLNEYE---DSDTFSLATGVAL-VRDEKTPRDIGTFLDKDPMDFRS 102
           G  +G     ++ NRL  +    DSD  +L T  A+ +R +  P D  T L+ DP  F++
Sbjct: 196 GHTIGNGHCPQITNRLYNFTGKGDSDP-NLDTEYAVKLRGKCKPTDTTTALEMDPGSFKT 254

Query: 103 IMEDASNLISKR 114
             E    L+S+R
Sbjct: 255 FDESYFKLVSQR 266


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.136    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,282,507
Number of Sequences: 28952
Number of extensions: 230961
Number of successful extensions: 555
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 553
Number of HSP's gapped (non-prelim): 3
length of query: 314
length of database: 12,070,560
effective HSP length: 81
effective length of query: 233
effective length of database: 9,725,448
effective search space: 2266029384
effective search space used: 2266029384
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)