GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000046-TA|BGIBMGA000046-PA|IPR012464|Protein of unknown
function DUF1676
         (314 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80931-2|AAB37999.1|  467|Caenorhabditis elegans Hypothetical pr...    33   0.26 
Z73899-5|CAA98080.1|  372|Caenorhabditis elegans Hypothetical pr...    30   2.5  
AL021447-2|CAA16273.2|  807|Caenorhabditis elegans Hypothetical ...    29   3.2  
AF024491-2|AAT92081.1|  765|Caenorhabditis elegans Hypothetical ...    29   4.3  
Z68317-5|CAA92689.2|  165|Caenorhabditis elegans Hypothetical pr...    29   5.7  
Z49908-3|CAA90094.2|  382|Caenorhabditis elegans Hypothetical pr...    28   7.5  

>U80931-2|AAB37999.1|  467|Caenorhabditis elegans Hypothetical
           protein T01B11.2a protein.
          Length = 467

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 2/62 (3%)

Query: 18  IQLSLQEGEEINENVVQGSKLNECLNDRRGAEVGVCFGKELINRLNEYEDSDTFSLATGV 77
           ++ S Q GE++   +    K +EC+ D RG  VG+ +G +L+   N  E     ++AT +
Sbjct: 361 LEHSQQMGEKLEVALRDLQKKHECIGDIRG--VGLFWGIDLVKDRNTREPDQKLAIATIL 418

Query: 78  AL 79
           AL
Sbjct: 419 AL 420


>Z73899-5|CAA98080.1|  372|Caenorhabditis elegans Hypothetical
           protein ZK829.7 protein.
          Length = 372

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 116 LHWDLSAMYPGLVMR---IGPTLANGVLEFVMDPRVKDRAYQHQAQ-GELSTGRLLARNL 171
           +HWD S     L+MR   +  T  N V +FV  PR   R+ +  A+ G L  G L   ++
Sbjct: 220 VHWDDSEFEEYLIMRTKDVARTGVNVVFDFVTSPRTVTRSLKCLAEGGVLFVGGLSGLDV 279

Query: 172 LVP 174
            +P
Sbjct: 280 QLP 282


>AL021447-2|CAA16273.2|  807|Caenorhabditis elegans Hypothetical
           protein F19B2.6 protein.
          Length = 807

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/58 (20%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 257 HHEYYYREKSAETTTASPITPDELRDRLERL---FVTKKEVESSRDDRNARNFVWTPI 311
           +H+Y+  + S   T+  P++ + +R + +R       +K ++  +DD  A    W  +
Sbjct: 526 NHDYFPSDDSMSQTSQEPVSVESIRKKTKRAKNKLEARKSLQKKKDDLKASRKSWEEV 583


>AF024491-2|AAT92081.1|  765|Caenorhabditis elegans Hypothetical
           protein C24A1.3b protein.
          Length = 765

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 89  IGTFLDKDPMDFRSIMEDASNLISKRSLHWDLSAMYPGLVMRIGPTLANGV 139
           +GT LD DP  F  I E   N    R LH +   M P   +RI   +A G+
Sbjct: 578 VGTSLD-DPSQFAIITEFVENGSLFRLLHEEKRVMDPAFRLRISLDVARGM 627


>Z68317-5|CAA92689.2|  165|Caenorhabditis elegans Hypothetical
           protein T01H3.5 protein.
          Length = 165

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/46 (30%), Positives = 24/46 (52%)

Query: 257 HHEYYYREKSAETTTASPITPDELRDRLERLFVTKKEVESSRDDRN 302
           H E     KS E+T+   IT +   ++LE +  T K  ES +++ +
Sbjct: 28  HSECDQLSKSNESTSLKDITEEPKDEKLESIIETAKNKESEKEENS 73


>Z49908-3|CAA90094.2|  382|Caenorhabditis elegans Hypothetical
           protein C07E3.3 protein.
          Length = 382

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/30 (46%), Positives = 17/30 (56%)

Query: 266 SAETTTASPITPDELRDRLERLFVTKKEVE 295
           S ET        DELRDR+ R  + K+EVE
Sbjct: 37  STETAEPFDFREDELRDRIRREQLRKREVE 66


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.136    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,506,235
Number of Sequences: 27539
Number of extensions: 241578
Number of successful extensions: 606
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 603
Number of HSP's gapped (non-prelim): 6
length of query: 314
length of database: 12,573,161
effective HSP length: 81
effective length of query: 233
effective length of database: 10,342,502
effective search space: 2409802966
effective search space used: 2409802966
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)