Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000045-TA|BGIBMGA000045-PA|IPR012464|Protein of unknown
function DUF1676
         (241 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14805| Best HMM Match : DUF964 (HMM E-Value=0.22)                   31   1.1  
SB_39938| Best HMM Match : ANF_receptor (HMM E-Value=6.4e-14)          30   2.0  
SB_10359| Best HMM Match : CoA_transf_3 (HMM E-Value=0)                29   3.5  
SB_53791| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  

>SB_14805| Best HMM Match : DUF964 (HMM E-Value=0.22)
          Length = 628

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 66  GEPGKPS-TEPLPADPEARDAEVNYRLLDGVVNLFETHSIEVKMNPAEKEELQRSLEE 122
           G+P K + + P+PA      AEVN + LD ++ +FE    +       +  LQ+  E+
Sbjct: 220 GKPSKQTGSVPVPAKALVTRAEVNAKDLDSLIEMFEHFKADTASELMRQNYLQQQREQ 277


>SB_39938| Best HMM Match : ANF_receptor (HMM E-Value=6.4e-14)
          Length = 966

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 4/98 (4%)

Query: 21  LETAISFVQDCNEDYFLCVKEKLLRIVENARTSRSVNLVDGV--FIKGEPGKPSTEPLPA 78
           LE A S + +  E       EKL  +V++ R  R+  +V  +  F+K   G+    PLP 
Sbjct: 658 LEKARSGIVEAEEGMERVNPEKLETMVKDVR-KRTKEIVKSLKHFLKETKGEVDI-PLPP 715

Query: 79  DPEARDAEVNYRLLDGVVNLFETHSIEVKMNPAEKEEL 116
            PE  + E      +  V++ +T S  V+  P E  E+
Sbjct: 716 APEVSEPEPEVVPEEVEVDVKQTKSTPVESEPTETPEV 753


>SB_10359| Best HMM Match : CoA_transf_3 (HMM E-Value=0)
          Length = 382

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 1/99 (1%)

Query: 4   YILIALFALACAERDSTLETAISFVQDCNEDYFLCVKEKLLRIVENARTSRSVNLVDGVF 63
           YI +         RDS L   ++ + D      +CV   LL ++E  ++ R   ++D   
Sbjct: 128 YIALTGLLSMLGRRDSNLTPPLNLLGDFAGGGLMCVMGILLALLERGKSGRG-QVIDTAM 186

Query: 64  IKGEPGKPSTEPLPADPEARDAEVNYRLLDGVVNLFETH 102
           + G P   S   +  D      +    LLD     ++T+
Sbjct: 187 VDGAPYVGSFAYMSQDLGIWPGKRGENLLDTGAPFYDTY 225


>SB_53791| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1186

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 19  STLETAISFVQDCNEDYFLCVKEKLLRIVENARTSR 54
           ST      FV   ++DYFLC+   L  + + A+T R
Sbjct: 807 STRNYEFDFVLRIDDDYFLCLGRLLAELPQRAKTPR 842


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.132    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,733,230
Number of Sequences: 59808
Number of extensions: 195558
Number of successful extensions: 379
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 377
Number of HSP's gapped (non-prelim): 4
length of query: 241
length of database: 16,821,457
effective HSP length: 80
effective length of query: 161
effective length of database: 12,036,817
effective search space: 1937927537
effective search space used: 1937927537
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 59 (27.9 bits)