Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000045-TA|BGIBMGA000045-PA|IPR012464|Protein of unknown
function DUF1676
(241 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X71428-1|CAA50559.1| 525|Homo sapiens FUS gycline rich protein ... 30 6.3
X71427-1|CAA50558.1| 462|Homo sapiens FUS-CHOP protein fusion p... 30 6.3
S62140-1|AAB27102.1| 526|Homo sapiens TLS protein. 30 6.3
S62138-1|AAB27103.1| 462|Homo sapiens TLS-CHOP protein. 30 6.3
CR456747-1|CAG33028.1| 526|Homo sapiens FUS protein. 30 6.3
BT007131-1|AAP35795.1| 526|Homo sapiens fusion, derived from t(... 30 6.3
BC032639-1|AAH32639.1| 1220|Homo sapiens eukaryotic translation ... 30 6.3
BC026062-1|AAH26062.1| 526|Homo sapiens fusion (involved in t(1... 30 6.3
BC002459-1|AAH02459.1| 526|Homo sapiens fusion (involved in t(1... 30 6.3
BC000402-1|AAH00402.1| 526|Homo sapiens fusion (involved in t(1... 30 6.3
AL133563-1|CAB63717.1| 1132|Homo sapiens hypothetical protein pr... 30 6.3
AJ006776-1|CAB44357.1| 1220|Homo sapiens IF2 protein protein. 30 6.3
AF078035-1|AAD16006.1| 1220|Homo sapiens translation initiation ... 30 6.3
AF071213-2|AAC35284.1| 525|Homo sapiens FUS/TLS protein protein. 30 6.3
AF071213-1|AAC35285.1| 526|Homo sapiens FUS/TLS protein protein. 30 6.3
AB018284-1|BAA34461.2| 1222|Homo sapiens KIAA0741 protein protein. 30 6.3
>X71428-1|CAA50559.1| 525|Homo sapiens FUS gycline rich protein
protein.
Length = 525
Score = 30.3 bits (65), Expect = 6.3
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 211 GHGGFSGYGSDWSKNSEDAQNLAYSGYTQK 240
G+G GYGS S S Q +Y GY Q+
Sbjct: 73 GYGSTGGYGSSQSSQSSYGQQSSYPGYGQQ 102
>X71427-1|CAA50558.1| 462|Homo sapiens FUS-CHOP protein fusion
protein.
Length = 462
Score = 30.3 bits (65), Expect = 6.3
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 211 GHGGFSGYGSDWSKNSEDAQNLAYSGYTQK 240
G+G GYGS S S Q +Y GY Q+
Sbjct: 74 GYGSTGGYGSSQSSQSSYGQQSSYPGYGQQ 103
>S62140-1|AAB27102.1| 526|Homo sapiens TLS protein.
Length = 526
Score = 30.3 bits (65), Expect = 6.3
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 211 GHGGFSGYGSDWSKNSEDAQNLAYSGYTQK 240
G+G GYGS S S Q +Y GY Q+
Sbjct: 74 GYGSTGGYGSSQSSQSSYGQQSSYPGYGQQ 103
>S62138-1|AAB27103.1| 462|Homo sapiens TLS-CHOP protein.
Length = 462
Score = 30.3 bits (65), Expect = 6.3
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 211 GHGGFSGYGSDWSKNSEDAQNLAYSGYTQK 240
G+G GYGS S S Q +Y GY Q+
Sbjct: 74 GYGSTGGYGSSQSSQSSYGQQSSYPGYGQQ 103
>CR456747-1|CAG33028.1| 526|Homo sapiens FUS protein.
Length = 526
Score = 30.3 bits (65), Expect = 6.3
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 211 GHGGFSGYGSDWSKNSEDAQNLAYSGYTQK 240
G+G GYGS S S Q +Y GY Q+
Sbjct: 74 GYGSTGGYGSSQSSQSSYGQQSSYPGYGQQ 103
>BT007131-1|AAP35795.1| 526|Homo sapiens fusion, derived from
t(12;16) malignant liposarcoma protein.
Length = 526
Score = 30.3 bits (65), Expect = 6.3
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 211 GHGGFSGYGSDWSKNSEDAQNLAYSGYTQK 240
G+G GYGS S S Q +Y GY Q+
Sbjct: 74 GYGSTGGYGSSQSSQSSYGQQSSYPGYGQQ 103
>BC032639-1|AAH32639.1| 1220|Homo sapiens eukaryotic translation
initiation factor 5B protein.
Length = 1220
Score = 30.3 bits (65), Expect = 6.3
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 12/94 (12%)
Query: 40 KEKLLRIVENARTSRSVNLVDGVFI--KGEPGKPSTEPLPADPEARDAEVNYRLLD--GV 95
++K+ + +E+ S S+ L V + +G P K T P P +PE + + L D +
Sbjct: 451 RKKIPQQLESKEVSESMELCAAVEVMEQGVPEKEETPP-PVEPEEEEDTEDAGLDDWEAM 509
Query: 96 VNLFETHS-------IEVKMNPAEKEELQRSLEE 122
+ ET IEVK NP E+EE + EE
Sbjct: 510 ASDEETEKVEGNTVHIEVKENPEEEEEEEEEEEE 543
>BC026062-1|AAH26062.1| 526|Homo sapiens fusion (involved in
t(12;16) in malignant liposarcoma) protein.
Length = 526
Score = 30.3 bits (65), Expect = 6.3
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 211 GHGGFSGYGSDWSKNSEDAQNLAYSGYTQK 240
G+G GYGS S S Q +Y GY Q+
Sbjct: 74 GYGSTGGYGSSQSSQSSYGQQSSYPGYGQQ 103
>BC002459-1|AAH02459.1| 526|Homo sapiens fusion (involved in
t(12;16) in malignant liposarcoma) protein.
Length = 526
Score = 30.3 bits (65), Expect = 6.3
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 211 GHGGFSGYGSDWSKNSEDAQNLAYSGYTQK 240
G+G GYGS S S Q +Y GY Q+
Sbjct: 74 GYGSTGGYGSSQSSQSSYGQQSSYPGYGQQ 103
>BC000402-1|AAH00402.1| 526|Homo sapiens fusion (involved in
t(12;16) in malignant liposarcoma) protein.
Length = 526
Score = 30.3 bits (65), Expect = 6.3
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 211 GHGGFSGYGSDWSKNSEDAQNLAYSGYTQK 240
G+G GYGS S S Q +Y GY Q+
Sbjct: 74 GYGSTGGYGSSQSSQSSYGQQSSYPGYGQQ 103
>AL133563-1|CAB63717.1| 1132|Homo sapiens hypothetical protein
protein.
Length = 1132
Score = 30.3 bits (65), Expect = 6.3
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 12/94 (12%)
Query: 40 KEKLLRIVENARTSRSVNLVDGVFI--KGEPGKPSTEPLPADPEARDAEVNYRLLD--GV 95
++K+ + +E+ S S+ L V + +G P K T P P +PE + + L D +
Sbjct: 363 RKKIPQQLESKEVSESMELCAAVEVMEQGVPEKEETPP-PVEPEEEEDTEDAGLDDWEAM 421
Query: 96 VNLFETHS-------IEVKMNPAEKEELQRSLEE 122
+ ET IEVK NP E+EE + EE
Sbjct: 422 ASDEETEKVEGNKVHIEVKENPEEEEEEEEEEEE 455
>AJ006776-1|CAB44357.1| 1220|Homo sapiens IF2 protein protein.
Length = 1220
Score = 30.3 bits (65), Expect = 6.3
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 12/94 (12%)
Query: 40 KEKLLRIVENARTSRSVNLVDGVFI--KGEPGKPSTEPLPADPEARDAEVNYRLLD--GV 95
++K+ + +E+ S S+ L V + +G P K T P P +PE + + L D +
Sbjct: 451 RKKIPQQLESKEVSESMELCAAVEVMEQGVPEKEETPP-PVEPEEEEDTEDAGLDDWEAM 509
Query: 96 VNLFETHS-------IEVKMNPAEKEELQRSLEE 122
+ ET IEVK NP E+EE + EE
Sbjct: 510 ASDEETEKVEGNTVHIEVKENPEEEEEEEEEEEE 543
>AF078035-1|AAD16006.1| 1220|Homo sapiens translation initiation
factor IF2 protein.
Length = 1220
Score = 30.3 bits (65), Expect = 6.3
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 12/94 (12%)
Query: 40 KEKLLRIVENARTSRSVNLVDGVFI--KGEPGKPSTEPLPADPEARDAEVNYRLLD--GV 95
++K+ + +E+ S S+ L V + +G P K T P P +PE + + L D +
Sbjct: 451 RKKIPQQLESKEVSESMELCAAVEVMEQGVPEKEETPP-PVEPEEEEDTEDAGLDDWEAM 509
Query: 96 VNLFETHS-------IEVKMNPAEKEELQRSLEE 122
+ ET IEVK NP E+EE + EE
Sbjct: 510 ASDEETEKVEGNTVHIEVKENPEEEEEEEEEEEE 543
>AF071213-2|AAC35284.1| 525|Homo sapiens FUS/TLS protein protein.
Length = 525
Score = 30.3 bits (65), Expect = 6.3
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 211 GHGGFSGYGSDWSKNSEDAQNLAYSGYTQK 240
G+G GYGS S S Q +Y GY Q+
Sbjct: 73 GYGSTGGYGSSQSSQSSYGQQSSYPGYGQQ 102
>AF071213-1|AAC35285.1| 526|Homo sapiens FUS/TLS protein protein.
Length = 526
Score = 30.3 bits (65), Expect = 6.3
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 211 GHGGFSGYGSDWSKNSEDAQNLAYSGYTQK 240
G+G GYGS S S Q +Y GY Q+
Sbjct: 74 GYGSTGGYGSSQSSQSSYGQQSSYPGYGQQ 103
>AB018284-1|BAA34461.2| 1222|Homo sapiens KIAA0741 protein protein.
Length = 1222
Score = 30.3 bits (65), Expect = 6.3
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 12/94 (12%)
Query: 40 KEKLLRIVENARTSRSVNLVDGVFI--KGEPGKPSTEPLPADPEARDAEVNYRLLD--GV 95
++K+ + +E+ S S+ L V + +G P K T P P +PE + + L D +
Sbjct: 453 RKKIPQQLESKEVSESMELCAAVEVMEQGVPEKEETPP-PVEPEEEEDTEDAGLDDWEAM 511
Query: 96 VNLFETHS-------IEVKMNPAEKEELQRSLEE 122
+ ET IEVK NP E+EE + EE
Sbjct: 512 ASDEETEKVEGNKVHIEVKENPEEEEEEEEEEEE 545
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.315 0.132 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,634,613
Number of Sequences: 224733
Number of extensions: 840214
Number of successful extensions: 2070
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2059
Number of HSP's gapped (non-prelim): 16
length of query: 241
length of database: 73,234,838
effective HSP length: 88
effective length of query: 153
effective length of database: 53,458,334
effective search space: 8179125102
effective search space used: 8179125102
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 64 (29.9 bits)
- SilkBase 1999-2023 -