Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000045-TA|BGIBMGA000045-PA|IPR012464|Protein of unknown
function DUF1676
         (241 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g21580.1 68417.m03122 oxidoreductase, zinc-binding dehydrogen...    30   1.6  
At2g16270.1 68415.m01863 expressed protein  and genefinder; expr...    28   4.9  
At1g33240.1 68414.m04108 trihelix DNA-binding protein, putative ...    28   6.5  
At5g58040.1 68418.m07263 fip1 motif-containing protein contains ...    27   8.6  

>At4g21580.1 68417.m03122 oxidoreductase, zinc-binding dehydrogenase
           family protein Pig3 Homo sapiens, PID:G2754812; contains
           Pfam zinc-binding dehydrogenase domain PF00107
          Length = 325

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 67  EPGKPSTEPLP--ADPEARDAEVNYRLLDGVVNLFET 101
           EPGKP    L   ADPE +D EV  R+L   +N  +T
Sbjct: 8   EPGKPEVLQLRDVADPEVKDDEVLIRVLATALNRADT 44


>At2g16270.1 68415.m01863 expressed protein  and genefinder;
           expression supported by MPSS
          Length = 759

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 10/56 (17%)

Query: 70  KPSTEPLPADPEARDAEVNYRLL--DGV-VNLFETHSIEVKMNPAEKEELQRSLEE 122
           KPST     D E+ D E N + L  DG+ +N+ E    E +M+P EK E ++ LEE
Sbjct: 457 KPST-----DIESNDGERNLKALFEDGLELNIEELR--ESEMSPEEKLETEKKLEE 505


>At1g33240.1 68414.m04108 trihelix DNA-binding protein, putative
           similar to GTL1 [Arabidopsis thaliana] GI:2664198
          Length = 669

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 6/88 (6%)

Query: 35  YFLCVKEKLLRIVENARTSRSVNLVDGVF---IKGEPGKPSTEPLPADPEARDAEVNYRL 91
           Y+  VKE   +  ++A+T    + +D ++   + G  G  ST  LP D +          
Sbjct: 494 YYKKVKESNKKRPQDAKTCPYFHRLDLLYRNKVLGSGGGSSTSGLPQDQKQSPVTAMKPP 553

Query: 92  LDGVVNLFETHSIEVKMNPAEKEELQRS 119
            +G+VN+ +TH      +  E+E ++ S
Sbjct: 554 QEGLVNVQQTHG---SASTEEEEPIEES 578


>At5g58040.1 68418.m07263 fip1 motif-containing protein contains
           Pfam profile PF05182: Fip1 motif
          Length = 1192

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)

Query: 209 DAGHGGFSGYGSDWSKNSED 228
           D G+GG  G G DW  +SED
Sbjct: 134 DGGYGG-QGEGDDWDSDSED 152


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.132    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,111,203
Number of Sequences: 28952
Number of extensions: 138456
Number of successful extensions: 281
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 281
Number of HSP's gapped (non-prelim): 4
length of query: 241
length of database: 12,070,560
effective HSP length: 79
effective length of query: 162
effective length of database: 9,783,352
effective search space: 1584903024
effective search space used: 1584903024
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 58 (27.5 bits)