GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000045-TA|BGIBMGA000045-PA|IPR012464|Protein of unknown
function DUF1676
         (241 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce...    27   1.9  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    26   5.7  
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    25   7.5  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   9.9  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    25   9.9  

>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 4/44 (9%)

Query: 28  VQDCNEDYFLCVKEKLLRI----VENARTSRSVNLVDGVFIKGE 67
           +QD +ED F+ +  KLLRI     +N   +   NL + VFI GE
Sbjct: 79  LQDLSEDEFVSLYNKLLRIHMGVRKNLEKNFYKNLNEYVFISGE 122


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 66  GEPGKPSTEPLPADPEARDAEVNYRLLDGVVNLFETHSIEVKMNPAEKEELQRSLE 121
           GEP KP   PLP + EA    +  +L    +N +  H   V  +P+   E+Q ++E
Sbjct: 77  GEPLKPYQTPLPPELEAPLQLLISKLTQHYINGWYKH---VSEDPSFIREVQSTIE 129


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)

Query: 99  FETHSIEVKMNPAEKEELQRSLEE 122
           + + +IE+K+   EKEE  R+LEE
Sbjct: 97  YASKNIELKLQKKEKEEELRNLEE 120


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 39  VKEKLLRIVENARTSRSVNLVDGVFIKGEPGKPSTEPLPADPEARDAEV 87
           V+E L  +VEN ++  +V + +    +  P  PS+ P+ A   A  AE+
Sbjct: 175 VQEFLSIVVENYKSMTTV-VSEAFPPRSAPNTPSSHPMSAASSASPAEI 222


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 74  EPLPADPEARDAEVNYRLLDGVVNLFETHSIEVKM 108
           +PLP   E++ A V+Y  L   +  FE HS  V M
Sbjct: 10  KPLPKLDESKQAWVSYLWLKKALPGFEEHSAYVYM 44


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.132    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 789,487
Number of Sequences: 5004
Number of extensions: 25764
Number of successful extensions: 56
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 53
Number of HSP's gapped (non-prelim): 6
length of query: 241
length of database: 2,362,478
effective HSP length: 71
effective length of query: 170
effective length of database: 2,007,194
effective search space: 341222980
effective search space used: 341222980
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 52 (25.0 bits)