GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000045-TA|BGIBMGA000045-PA|IPR012464|Protein of unknown
function DUF1676
         (241 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1457 - 33741048-33741146,33741647-33741760,33741938-337420...    29   3.4  
07_01_0353 + 2563807-2564496,2564595-2564660,2564853-2564918,256...    28   7.8  

>04_04_1457 - 33741048-33741146,33741647-33741760,33741938-33742052,
            33742154-33742560,33743342-33743476,33743576-33743970,
            33744225-33744916,33745014-33745097,33745195-33745286,
            33745374-33745457,33745535-33745714,33746258-33746302,
            33746399-33746692,33747199-33747585,33747713-33747899,
            33748042-33748118,33748936-33749067,33749315-33749416,
            33749744-33749827,33749902-33749992,33750105-33750178,
            33750644-33750664,33751433-33751477,33752427-33752561,
            33752693-33752752
          Length = 1376

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/46 (21%), Positives = 23/46 (50%)

Query: 17   RDSTLETAISFVQDCNEDYFLCVKEKLLRIVENARTSRSVNLVDGV 62
            +   ++  + F QDC E YF+ + +  L+I+  +    +    +G+
Sbjct: 1237 KKDAIQKLVKFFQDCPEQYFVHILDAFLKIITKSSRINTAMATNGL 1282


>07_01_0353 + 2563807-2564496,2564595-2564660,2564853-2564918,
            2565044-2565115,2565196-2565261,2565355-2565417,
            2565505-2565570,2565963-2566062,2567403-2567504,
            2567772-2567995,2568200-2568314,2568653-2568763,
            2568873-2569088,2569426-2569624,2570690-2570790,
            2570872-2570919,2571052-2571236,2571345-2571462,
            2571572-2571699,2571981-2572107,2572529-2572647,
            2572770-2572938,2573078-2573162,2573247-2573320,
            2573449-2573568,2574068-2574251,2574343-2574464,
            2574548-2574755,2574885-2574958,2575047-2575185,
            2575275-2575456,2575852-2576007,2576153-2576284,
            2576508-2576566,2576913-2576945,2577065-2577196,
            2577303-2577479
          Length = 1675

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 64   IKGEPGKPSTEPLPADPEARDAEVNYRLLDGVV 96
            ++G+P   STEP+  +PE    EV  +L DG V
Sbjct: 1528 VEGQPISASTEPIAVEPEIY-KEVKQKLDDGSV 1559


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.132    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,939,067
Number of Sequences: 37544
Number of extensions: 165483
Number of successful extensions: 361
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 360
Number of HSP's gapped (non-prelim): 2
length of query: 241
length of database: 14,793,348
effective HSP length: 80
effective length of query: 161
effective length of database: 11,789,828
effective search space: 1898162308
effective search space used: 1898162308
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 59 (27.9 bits)