GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000045-TA|BGIBMGA000045-PA|IPR012464|Protein of unknown
function DUF1676
         (241 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X71428-1|CAA50559.1|  525|Homo sapiens FUS gycline rich protein ...    30   6.3  
X71427-1|CAA50558.1|  462|Homo sapiens FUS-CHOP protein fusion p...    30   6.3  
S62140-1|AAB27102.1|  526|Homo sapiens TLS protein.                    30   6.3  
S62138-1|AAB27103.1|  462|Homo sapiens TLS-CHOP protein.               30   6.3  
CR456747-1|CAG33028.1|  526|Homo sapiens FUS protein.                  30   6.3  
BT007131-1|AAP35795.1|  526|Homo sapiens fusion, derived from t(...    30   6.3  
BC032639-1|AAH32639.1| 1220|Homo sapiens eukaryotic translation ...    30   6.3  
BC026062-1|AAH26062.1|  526|Homo sapiens fusion (involved in t(1...    30   6.3  
BC002459-1|AAH02459.1|  526|Homo sapiens fusion (involved in t(1...    30   6.3  
BC000402-1|AAH00402.1|  526|Homo sapiens fusion (involved in t(1...    30   6.3  
AL133563-1|CAB63717.1| 1132|Homo sapiens hypothetical protein pr...    30   6.3  
AJ006776-1|CAB44357.1| 1220|Homo sapiens IF2 protein protein.          30   6.3  
AF078035-1|AAD16006.1| 1220|Homo sapiens translation initiation ...    30   6.3  
AF071213-2|AAC35284.1|  525|Homo sapiens FUS/TLS protein protein.      30   6.3  
AF071213-1|AAC35285.1|  526|Homo sapiens FUS/TLS protein protein.      30   6.3  
AB018284-1|BAA34461.2| 1222|Homo sapiens KIAA0741 protein protein.     30   6.3  

>X71428-1|CAA50559.1|  525|Homo sapiens FUS gycline rich protein
           protein.
          Length = 525

 Score = 30.3 bits (65), Expect = 6.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 211 GHGGFSGYGSDWSKNSEDAQNLAYSGYTQK 240
           G+G   GYGS  S  S   Q  +Y GY Q+
Sbjct: 73  GYGSTGGYGSSQSSQSSYGQQSSYPGYGQQ 102


>X71427-1|CAA50558.1|  462|Homo sapiens FUS-CHOP protein fusion
           protein.
          Length = 462

 Score = 30.3 bits (65), Expect = 6.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 211 GHGGFSGYGSDWSKNSEDAQNLAYSGYTQK 240
           G+G   GYGS  S  S   Q  +Y GY Q+
Sbjct: 74  GYGSTGGYGSSQSSQSSYGQQSSYPGYGQQ 103


>S62140-1|AAB27102.1|  526|Homo sapiens TLS protein.
          Length = 526

 Score = 30.3 bits (65), Expect = 6.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 211 GHGGFSGYGSDWSKNSEDAQNLAYSGYTQK 240
           G+G   GYGS  S  S   Q  +Y GY Q+
Sbjct: 74  GYGSTGGYGSSQSSQSSYGQQSSYPGYGQQ 103


>S62138-1|AAB27103.1|  462|Homo sapiens TLS-CHOP protein.
          Length = 462

 Score = 30.3 bits (65), Expect = 6.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 211 GHGGFSGYGSDWSKNSEDAQNLAYSGYTQK 240
           G+G   GYGS  S  S   Q  +Y GY Q+
Sbjct: 74  GYGSTGGYGSSQSSQSSYGQQSSYPGYGQQ 103


>CR456747-1|CAG33028.1|  526|Homo sapiens FUS protein.
          Length = 526

 Score = 30.3 bits (65), Expect = 6.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 211 GHGGFSGYGSDWSKNSEDAQNLAYSGYTQK 240
           G+G   GYGS  S  S   Q  +Y GY Q+
Sbjct: 74  GYGSTGGYGSSQSSQSSYGQQSSYPGYGQQ 103


>BT007131-1|AAP35795.1|  526|Homo sapiens fusion, derived from
           t(12;16) malignant liposarcoma protein.
          Length = 526

 Score = 30.3 bits (65), Expect = 6.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 211 GHGGFSGYGSDWSKNSEDAQNLAYSGYTQK 240
           G+G   GYGS  S  S   Q  +Y GY Q+
Sbjct: 74  GYGSTGGYGSSQSSQSSYGQQSSYPGYGQQ 103


>BC032639-1|AAH32639.1| 1220|Homo sapiens eukaryotic translation
           initiation factor 5B protein.
          Length = 1220

 Score = 30.3 bits (65), Expect = 6.3
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 12/94 (12%)

Query: 40  KEKLLRIVENARTSRSVNLVDGVFI--KGEPGKPSTEPLPADPEARDAEVNYRLLD--GV 95
           ++K+ + +E+   S S+ L   V +  +G P K  T P P +PE  +   +  L D   +
Sbjct: 451 RKKIPQQLESKEVSESMELCAAVEVMEQGVPEKEETPP-PVEPEEEEDTEDAGLDDWEAM 509

Query: 96  VNLFETHS-------IEVKMNPAEKEELQRSLEE 122
            +  ET         IEVK NP E+EE +   EE
Sbjct: 510 ASDEETEKVEGNTVHIEVKENPEEEEEEEEEEEE 543


>BC026062-1|AAH26062.1|  526|Homo sapiens fusion (involved in
           t(12;16) in malignant liposarcoma) protein.
          Length = 526

 Score = 30.3 bits (65), Expect = 6.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 211 GHGGFSGYGSDWSKNSEDAQNLAYSGYTQK 240
           G+G   GYGS  S  S   Q  +Y GY Q+
Sbjct: 74  GYGSTGGYGSSQSSQSSYGQQSSYPGYGQQ 103


>BC002459-1|AAH02459.1|  526|Homo sapiens fusion (involved in
           t(12;16) in malignant liposarcoma) protein.
          Length = 526

 Score = 30.3 bits (65), Expect = 6.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 211 GHGGFSGYGSDWSKNSEDAQNLAYSGYTQK 240
           G+G   GYGS  S  S   Q  +Y GY Q+
Sbjct: 74  GYGSTGGYGSSQSSQSSYGQQSSYPGYGQQ 103


>BC000402-1|AAH00402.1|  526|Homo sapiens fusion (involved in
           t(12;16) in malignant liposarcoma) protein.
          Length = 526

 Score = 30.3 bits (65), Expect = 6.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 211 GHGGFSGYGSDWSKNSEDAQNLAYSGYTQK 240
           G+G   GYGS  S  S   Q  +Y GY Q+
Sbjct: 74  GYGSTGGYGSSQSSQSSYGQQSSYPGYGQQ 103


>AL133563-1|CAB63717.1| 1132|Homo sapiens hypothetical protein
           protein.
          Length = 1132

 Score = 30.3 bits (65), Expect = 6.3
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 12/94 (12%)

Query: 40  KEKLLRIVENARTSRSVNLVDGVFI--KGEPGKPSTEPLPADPEARDAEVNYRLLD--GV 95
           ++K+ + +E+   S S+ L   V +  +G P K  T P P +PE  +   +  L D   +
Sbjct: 363 RKKIPQQLESKEVSESMELCAAVEVMEQGVPEKEETPP-PVEPEEEEDTEDAGLDDWEAM 421

Query: 96  VNLFETHS-------IEVKMNPAEKEELQRSLEE 122
            +  ET         IEVK NP E+EE +   EE
Sbjct: 422 ASDEETEKVEGNKVHIEVKENPEEEEEEEEEEEE 455


>AJ006776-1|CAB44357.1| 1220|Homo sapiens IF2 protein protein.
          Length = 1220

 Score = 30.3 bits (65), Expect = 6.3
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 12/94 (12%)

Query: 40  KEKLLRIVENARTSRSVNLVDGVFI--KGEPGKPSTEPLPADPEARDAEVNYRLLD--GV 95
           ++K+ + +E+   S S+ L   V +  +G P K  T P P +PE  +   +  L D   +
Sbjct: 451 RKKIPQQLESKEVSESMELCAAVEVMEQGVPEKEETPP-PVEPEEEEDTEDAGLDDWEAM 509

Query: 96  VNLFETHS-------IEVKMNPAEKEELQRSLEE 122
            +  ET         IEVK NP E+EE +   EE
Sbjct: 510 ASDEETEKVEGNTVHIEVKENPEEEEEEEEEEEE 543


>AF078035-1|AAD16006.1| 1220|Homo sapiens translation initiation
           factor IF2 protein.
          Length = 1220

 Score = 30.3 bits (65), Expect = 6.3
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 12/94 (12%)

Query: 40  KEKLLRIVENARTSRSVNLVDGVFI--KGEPGKPSTEPLPADPEARDAEVNYRLLD--GV 95
           ++K+ + +E+   S S+ L   V +  +G P K  T P P +PE  +   +  L D   +
Sbjct: 451 RKKIPQQLESKEVSESMELCAAVEVMEQGVPEKEETPP-PVEPEEEEDTEDAGLDDWEAM 509

Query: 96  VNLFETHS-------IEVKMNPAEKEELQRSLEE 122
            +  ET         IEVK NP E+EE +   EE
Sbjct: 510 ASDEETEKVEGNTVHIEVKENPEEEEEEEEEEEE 543


>AF071213-2|AAC35284.1|  525|Homo sapiens FUS/TLS protein protein.
          Length = 525

 Score = 30.3 bits (65), Expect = 6.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 211 GHGGFSGYGSDWSKNSEDAQNLAYSGYTQK 240
           G+G   GYGS  S  S   Q  +Y GY Q+
Sbjct: 73  GYGSTGGYGSSQSSQSSYGQQSSYPGYGQQ 102


>AF071213-1|AAC35285.1|  526|Homo sapiens FUS/TLS protein protein.
          Length = 526

 Score = 30.3 bits (65), Expect = 6.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 211 GHGGFSGYGSDWSKNSEDAQNLAYSGYTQK 240
           G+G   GYGS  S  S   Q  +Y GY Q+
Sbjct: 74  GYGSTGGYGSSQSSQSSYGQQSSYPGYGQQ 103


>AB018284-1|BAA34461.2| 1222|Homo sapiens KIAA0741 protein protein.
          Length = 1222

 Score = 30.3 bits (65), Expect = 6.3
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 12/94 (12%)

Query: 40  KEKLLRIVENARTSRSVNLVDGVFI--KGEPGKPSTEPLPADPEARDAEVNYRLLD--GV 95
           ++K+ + +E+   S S+ L   V +  +G P K  T P P +PE  +   +  L D   +
Sbjct: 453 RKKIPQQLESKEVSESMELCAAVEVMEQGVPEKEETPP-PVEPEEEEDTEDAGLDDWEAM 511

Query: 96  VNLFETHS-------IEVKMNPAEKEELQRSLEE 122
            +  ET         IEVK NP E+EE +   EE
Sbjct: 512 ASDEETEKVEGNKVHIEVKENPEEEEEEEEEEEE 545


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.315    0.132    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,634,613
Number of Sequences: 224733
Number of extensions: 840214
Number of successful extensions: 2070
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2059
Number of HSP's gapped (non-prelim): 16
length of query: 241
length of database: 73,234,838
effective HSP length: 88
effective length of query: 153
effective length of database: 53,458,334
effective search space: 8179125102
effective search space used: 8179125102
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 64 (29.9 bits)