GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000045-TA|BGIBMGA000045-PA|IPR012464|Protein of unknown
function DUF1676
         (241 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067624-4|AAM15592.1|  644|Caenorhabditis elegans Hypothetical ...    29   3.0  
AF067624-3|AAM81100.2|  678|Caenorhabditis elegans Hypothetical ...    29   3.0  
AF067624-2|AAC17562.3|  634|Caenorhabditis elegans Hypothetical ...    29   3.0  
Z77132-1|CAB00859.1|  278|Caenorhabditis elegans Hypothetical pr...    28   6.9  

>AF067624-4|AAM15592.1|  644|Caenorhabditis elegans Hypothetical
           protein M01B12.4b protein.
          Length = 644

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 67  EPGKPSTEPLPADPEARDAEV 87
           EP +P+TEP+P   E +D E+
Sbjct: 379 EPSEPATEPIPEPNEPKDEEI 399


>AF067624-3|AAM81100.2|  678|Caenorhabditis elegans Hypothetical
           protein M01B12.4c protein.
          Length = 678

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 67  EPGKPSTEPLPADPEARDAEV 87
           EP +P+TEP+P   E +D E+
Sbjct: 369 EPSEPATEPIPEPNEPKDEEI 389


>AF067624-2|AAC17562.3|  634|Caenorhabditis elegans Hypothetical
           protein M01B12.4a protein.
          Length = 634

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 67  EPGKPSTEPLPADPEARDAEV 87
           EP +P+TEP+P   E +D E+
Sbjct: 369 EPSEPATEPIPEPNEPKDEEI 389


>Z77132-1|CAB00859.1|  278|Caenorhabditis elegans Hypothetical
           protein F54D1.1 protein.
          Length = 278

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 3/30 (10%)

Query: 212 HG-GF--SGYGSDWSKNSEDAQNLAYSGYT 238
           HG GF  +GYGSD++KN   + + A SGY+
Sbjct: 48  HGQGFIDNGYGSDYNKNDFYSPHSANSGYS 77


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.315    0.132    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,314,298
Number of Sequences: 27539
Number of extensions: 147500
Number of successful extensions: 424
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 421
Number of HSP's gapped (non-prelim): 4
length of query: 241
length of database: 12,573,161
effective HSP length: 79
effective length of query: 162
effective length of database: 10,397,580
effective search space: 1684407960
effective search space used: 1684407960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 58 (27.5 bits)