GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000044-TA|BGIBMGA000044-PA|IPR012464|Protein of unknown
function DUF1676
         (261 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    25   0.44 
DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    23   2.3  

>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 63  DGVKIYKSADVIQTGAPRSLDPLSRLKSYLETHSLSV 99
           +GV+I +  DVI+T  P    PL RL  + +   L V
Sbjct: 193 EGVEI-RIPDVIKTSGPHKFQPLLRLPKFKKKPLLCV 228


>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
          protein 11 protein.
          Length = 127

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query: 6  FIFALIAATSALPAQDTSYSENDLDDCLKKD 36
          F+ A+ ++ +      T Y   DLD+ +K D
Sbjct: 10 FVIAIASSLAENSKYTTKYDNVDLDEIIKSD 40


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.129    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,334
Number of Sequences: 317
Number of extensions: 1255
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 261
length of database: 114,650
effective HSP length: 56
effective length of query: 205
effective length of database: 96,898
effective search space: 19864090
effective search space used: 19864090
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 42 (21.0 bits)