GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000044-TA|BGIBMGA000044-PA|IPR012464|Protein of unknown
function DUF1676
         (261 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0037 + 20113866-20114006,20114389-20114415,20116511-201165...    30   2.2  
01_06_0106 - 26516930-26517349,26517474-26517905,26517981-265180...    29   2.9  
07_03_1063 + 23693549-23694833,23695102-23695146,23695495-23695550     29   3.8  
08_02_1250 - 25586442-25587023,25587141-25587827,25588389-25589492     28   8.7  

>03_05_0037 +
          20113866-20114006,20114389-20114415,20116511-20116582,
          20118237-20118365,20118557-20118589
          Length = 133

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 34 KKDPTSCLKNKFFSYVDKYIGQKDSFALTDGVKIYKSAD 72
          KK     LKN F    D Y+ Q D+  L+DG+ +Y++AD
Sbjct: 54 KKQVRKTLKNFFLGRNDLYLLQVDTSKLSDGL-VYEAAD 91


>01_06_0106 -
           26516930-26517349,26517474-26517905,26517981-26518058,
           26518352-26518499,26518662-26518765,26518838-26518912,
           26519195-26519261,26519352-26519356
          Length = 442

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 4/76 (5%)

Query: 67  IYKSADVIQTGAPRSLDPLSRLKSYLETHSLSVEVKGTDILDAVTGAGRALQDTVTSFVD 126
           ++ +  ++ TG P +    S L  YL  H+  + V G +I  A        QD V     
Sbjct: 152 LFVTGGLMITGVPEA----SPLSGYLSAHNFILSVDGLNITRADEWMKMLTQDNVVQISS 207

Query: 127 DDAAEESRGKKKKASK 142
            D  E S G +   S+
Sbjct: 208 RDLLEGSEGYRATGSR 223


>07_03_1063 + 23693549-23694833,23695102-23695146,23695495-23695550
          Length = 461

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/39 (41%), Positives = 21/39 (53%)

Query: 103 GTDILDAVTGAGRALQDTVTSFVDDDAAEESRGKKKKAS 141
           G+D   AV+GAG A  D  +S  D  AA  +  KK  A+
Sbjct: 391 GSDKSAAVSGAGAAASDADSSGADSGAAAAAAAKKPMAA 429


>08_02_1250 - 25586442-25587023,25587141-25587827,25588389-25589492
          Length = 790

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 92  LETHSLSVEVKGTDILDAVTGAGRALQDTVTSFVDDDAAEESRGKKK 138
           LET  L  EV+   +L A +G    L+D++   V+DD  E+    KK
Sbjct: 399 LETKKLETEVESELVLAARSG----LEDSIEHLVEDDKREKDMLSKK 441


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.129    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,216,221
Number of Sequences: 37544
Number of extensions: 169278
Number of successful extensions: 410
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 408
Number of HSP's gapped (non-prelim): 4
length of query: 261
length of database: 14,793,348
effective HSP length: 81
effective length of query: 180
effective length of database: 11,752,284
effective search space: 2115411120
effective search space used: 2115411120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)