GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000044-TA|BGIBMGA000044-PA|IPR012464|Protein of unknown
function DUF1676
         (261 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50259| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.95 
SB_39225| Best HMM Match : NIF (HMM E-Value=0)                         30   1.7  
SB_35716| Best HMM Match : PC4 (HMM E-Value=1.1e-12)                   30   2.2  
SB_30425| Best HMM Match : OAR (HMM E-Value=2.8)                       29   3.8  
SB_51555| Best HMM Match : ATP-cone (HMM E-Value=3.3)                  29   5.1  
SB_10418| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_50259| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 713

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 7   IFALIAATSALPAQDTSYSENDLDDCLKKDPTSCLKNKFFSYVDKYIGQKDSFALTD--G 64
           I A ++  S +   DT   E D  +C   DPTS +K K +      I ++ ++   +   
Sbjct: 632 ITATVSQLSTIKTMDTRLGEKDKVECYLADPTSAIKLKAWGDHAHEINERKTYTFKNLRV 691

Query: 65  VKIYKSADV 73
           VK Y S+ +
Sbjct: 692 VKEYNSSSL 700


>SB_39225| Best HMM Match : NIF (HMM E-Value=0)
          Length = 1772

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 10/42 (23%), Positives = 29/42 (69%)

Query: 100  EVKGTDILDAVTGAGRALQDTVTSFVDDDAAEESRGKKKKAS 141
            + +G+D++ +++G+  +  ++++    +D+A+E+  KKK+ S
Sbjct: 1668 DAEGSDVIGSISGSSSSSSNSLSGSDGEDSADENPPKKKRRS 1709


>SB_35716| Best HMM Match : PC4 (HMM E-Value=1.1e-12)
          Length = 501

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 10/136 (7%)

Query: 10  LIAATSALPAQDTSYSENDLDDCLKKDPTSCLKNKFFSY-VDKYIGQKDSFA--LTDGVK 66
           LI   S L A+     E D D   +K    C +   +S  +  YI Q       + +G K
Sbjct: 311 LIPDMSHLSAETMKNDEED-DTTPRKSSRQCKQVCQYSLDILPYIRQSKPILRQIFEGKK 369

Query: 67  IYKSADVIQTGAPRSLDPLSRLKSYLETHSLSVEVKGTDILDAVTGAGRALQDT---VTS 123
             +  D+ + G+ +  D L R   +    +  V+    DI++ +    + L D     TS
Sbjct: 370 YSERHDIFRNGSQKERDKLKRRSGFGPVTNEDVQ---HDIMEMLREFYQELDDNRFAETS 426

Query: 124 FVDDDAAEESRGKKKK 139
           +V D    ES+ K+KK
Sbjct: 427 YVSDVMLPESKKKQKK 442


>SB_30425| Best HMM Match : OAR (HMM E-Value=2.8)
          Length = 334

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 67  IYKSADVIQTGAPRSLDPLSRLKSYLETHSLSVE--VKGTDILDAVTGAGRALQDTVTSF 124
           +Y   DV+      +LD  S + + LET     E  V G DI   V  +      ++  +
Sbjct: 143 LYIFCDVVDRSQCLALDEPSNVLACLETRGRPHEKVVYGPDIPVCVAASSSEFVSSIRIW 202

Query: 125 VDDDAAEESRGKKKKASKIL 144
           + DD   + R  +K+  ++L
Sbjct: 203 IRDDRVSDPRLARKRTRRLL 222


>SB_51555| Best HMM Match : ATP-cone (HMM E-Value=3.3)
          Length = 491

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/25 (48%), Positives = 18/25 (72%)

Query: 79  PRSLDPLSRLKSYLETHSLSVEVKG 103
           P +LD ++ LK+ LE  +L +EVKG
Sbjct: 434 PNNLDNITHLKNVLELQTLHLEVKG 458


>SB_10418| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/50 (28%), Positives = 25/50 (50%)

Query: 96  SLSVEVKGTDILDAVTGAGRALQDTVTSFVDDDAAEESRGKKKKASKILG 145
           SL V++KGT+I+  +TG   + +        D   +   GKK+   ++ G
Sbjct: 36  SLRVKIKGTNIMVTITGFPSSRKTLNFGHEKDSTTDGETGKKRDHDEMYG 85


>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4856

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 4/95 (4%)

Query: 9    ALIAATSALPAQDTSYSENDLDDCLKKDPTSCLKNKFFSYVDKYIGQKDSFALTDGVKIY 68
            ALI  +  +P Q        +    +     C +N+ F+Y+D  I   D     D     
Sbjct: 4007 ALIVMSGMIPHQTDRTKNAKITRLNQSTRNYCFRNENFAYLDNTIALLDEDGSVDATLYL 4066

Query: 69   KSADVIQTGAPRSLDPLSRLKSYLETHSLSVEVKG 103
               +V  T     L  ++ L+S L+  SL+ EV G
Sbjct: 4067 DEQNVNSTSGMDRL--MANLRSKLQ--SLAEEVDG 4097


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.129    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,986,235
Number of Sequences: 59808
Number of extensions: 198827
Number of successful extensions: 399
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 396
Number of HSP's gapped (non-prelim): 7
length of query: 261
length of database: 16,821,457
effective HSP length: 81
effective length of query: 180
effective length of database: 11,977,009
effective search space: 2155861620
effective search space used: 2155861620
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)