GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000044-TA|BGIBMGA000044-PA|IPR012464|Protein of unknown
function DUF1676
         (261 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ973476-1|CAJ01523.1|  126|Anopheles gambiae hypothetical prote...    27   0.54 
AJ973475-1|CAJ01522.1|  127|Anopheles gambiae hypothetical prote...    27   0.54 
AJ697729-1|CAG26922.1|  126|Anopheles gambiae putative sensory a...    27   0.54 
AJ697728-1|CAG26921.1|  127|Anopheles gambiae putative sensory a...    27   0.54 
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    24   3.8  

>AJ973476-1|CAJ01523.1|  126|Anopheles gambiae hypothetical
          protein protein.
          Length = 126

 Score = 27.1 bits (57), Expect = 0.54
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 9  ALIAATSALPAQDTSYSENDLDDCLKKD 36
          AL+AA +A     T Y   DLD+ LK D
Sbjct: 10 ALVAAVAAQDKYTTKYDGVDLDEILKSD 37


>AJ973475-1|CAJ01522.1|  127|Anopheles gambiae hypothetical
          protein protein.
          Length = 127

 Score = 27.1 bits (57), Expect = 0.54
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 8  FALIAATSALPAQDTSYSENDLDDCLKKD 36
          FAL+A  +A     T Y   DLD+ LK D
Sbjct: 9  FALLALAAAQEQYTTKYDGIDLDEILKSD 37


>AJ697729-1|CAG26922.1|  126|Anopheles gambiae putative sensory
          appendage protein SAP-3 protein.
          Length = 126

 Score = 27.1 bits (57), Expect = 0.54
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 9  ALIAATSALPAQDTSYSENDLDDCLKKD 36
          AL+AA +A     T Y   DLD+ LK D
Sbjct: 10 ALVAAVAAQDKYTTKYDGVDLDEILKSD 37


>AJ697728-1|CAG26921.1|  127|Anopheles gambiae putative sensory
          appendage protein SAP-2 protein.
          Length = 127

 Score = 27.1 bits (57), Expect = 0.54
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 8  FALIAATSALPAQDTSYSENDLDDCLKKD 36
          FAL+A  +A     T Y   DLD+ LK D
Sbjct: 9  FALLALAAAQEQYTTKYDGIDLDEILKSD 37


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 2/81 (2%)

Query: 11   IAATSALPAQDTSYSENDLDDCLKKDPTSCLKNKFFSYVD-KYIGQKDSFALTDGVKIYK 69
            IA   ALP  D SY +  L    K+   +    K +++V+ K + Q  SF+     K+YK
Sbjct: 943  IAGLGALPNVDASYQKMSLKSLFKELEKANQHLKKYNHVNKKALDQFLSFS-EQKEKLYK 1001

Query: 70   SADVIQTGAPRSLDPLSRLKS 90
                +  G  +  + +  L++
Sbjct: 1002 RKAELDVGKDKICELMQLLEA 1022


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.315    0.129    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,902
Number of Sequences: 2123
Number of extensions: 5728
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 5
length of query: 261
length of database: 516,269
effective HSP length: 63
effective length of query: 198
effective length of database: 382,520
effective search space: 75738960
effective search space used: 75738960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 47 (23.0 bits)