GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000044-TA|BGIBMGA000044-PA|IPR012464|Protein of unknown
function DUF1676
         (261 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00048-8|AAB53829.1|  160|Caenorhabditis elegans Hypothetical pr...    29   3.3  

>U00048-8|AAB53829.1|  160|Caenorhabditis elegans Hypothetical
           protein C05D11.10 protein.
          Length = 160

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 4/87 (4%)

Query: 40  CLKNKFFSYVDKYIGQKDSFALTDGVKIYKSADVIQTGAPRSLDPLSRLKSYLETHSLSV 99
           C  N+F  Y+ KY  +   F   D   +    D +     + +D  SR K+ +      V
Sbjct: 38  CQMNEFNIYLKKYFARSFDFWALDKTSLGNIGDTVLI---KQIDGSSRPKANVSHAVDRV 94

Query: 100 EVKGTDILDAVTGAGRALQDTVTSFVD 126
             K  +I+D VTG  +   DT    +D
Sbjct: 95  VFKFGNIVDPVTGR-KIFNDTFADEID 120


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.315    0.129    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,426,447
Number of Sequences: 27539
Number of extensions: 146502
Number of successful extensions: 351
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 351
Number of HSP's gapped (non-prelim): 1
length of query: 261
length of database: 12,573,161
effective HSP length: 80
effective length of query: 181
effective length of database: 10,370,041
effective search space: 1876977421
effective search space used: 1876977421
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)