Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000043-TA|BGIBMGA000043-PA|undefined
         (163 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   5.1  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    20   9.0  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 6/21 (28%), Positives = 16/21 (76%)

Query: 70  LIEKDRVAQIFAQSLKVVDET 90
           ++E + +++ F Q+L ++DE+
Sbjct: 502 MLETNNLSETFTQNLSLMDES 522


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory
          receptor candidate 43 protein.
          Length = 353

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 11/38 (28%), Positives = 18/38 (47%)

Query: 55 AKFLQGHELHIKLPKLIEKDRVAQIFAQSLKVVDETYK 92
          +K    +E+HIK+  +  K+     F   + VV   YK
Sbjct: 53 SKSFHRNEIHIKIVLMFFKEASLYCFNYYVIVVTTFYK 90


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.140    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,799
Number of Sequences: 317
Number of extensions: 1270
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 163
length of database: 114,650
effective HSP length: 52
effective length of query: 111
effective length of database: 98,166
effective search space: 10896426
effective search space used: 10896426
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.4 bits)
S2: 40 (20.2 bits)