Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000043-TA|BGIBMGA000043-PA|undefined
         (163 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    30   0.20 
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    27   1.0  
SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces po...    27   1.0  
SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces p...    26   3.2  
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc...    24   9.7  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    24   9.7  

>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 29.9 bits (64), Expect = 0.20
 Identities = 9/15 (60%), Positives = 10/15 (66%)

Query: 147 WFGTDSKCPPPNCSC 161
           WF T + CP PNC C
Sbjct: 886 WFSTHTICPVPNCDC 900


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 53  RMAKFLQGHELHIKLPKLIEKDRVAQIFAQSLK 85
           R  KFLQG + +IK  +L E D   Q+  QS K
Sbjct: 196 RNQKFLQGIKEYIKKCQLTELDPTQQLLTQSRK 228


>SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 15  LGSFLDKDIDLADGVKLVSIPVPKTLENGRSFDNSVLYRMAKFLQGHELHIK 66
           L   LDKD+D+     ++   VP  L+    F   + YR+  F Q H  + K
Sbjct: 119 LEKILDKDLDMDVNYCIIRFTVPSVLK-APIF---IYYRLTNFFQNHRRYAK 166


>SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 12/20 (60%), Positives = 13/20 (65%)

Query: 85  KVVDETYKENGVTGRGKGDG 104
           KVV   YKENG+ G  KG G
Sbjct: 204 KVVRRIYKENGIFGFEKGLG 223


>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
           Sec9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 78  QIFAQSLKVVDETYKENGVTGRGKGDGSGGVALL 111
           Q   +S K +D+  K+N  + + KGD S GV++L
Sbjct: 310 QFAYRSQKRIDQAMKDNMKSNKKKGD-SKGVSIL 342


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 13/44 (29%), Positives = 20/44 (45%)

Query: 45   SFDNSVLYRMAKFLQGHELHIKLPKLIEKDRVAQIFAQSLKVVD 88
            S  +  LYR       +   IKL   +E   VAQ+F   + V++
Sbjct: 983  SLRSQTLYRTVSGFMNYSRAIKLLYRVENPDVAQLFEGQMDVLE 1026


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.140    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 711,382
Number of Sequences: 5004
Number of extensions: 24799
Number of successful extensions: 68
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 63
Number of HSP's gapped (non-prelim): 7
length of query: 163
length of database: 2,362,478
effective HSP length: 68
effective length of query: 95
effective length of database: 2,022,206
effective search space: 192109570
effective search space used: 192109570
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)