Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000043-TA|BGIBMGA000043-PA|undefined
(163 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0308 - 22199389-22199451,22199604-22199924,22200178-222004... 29 1.4
05_04_0154 - 18549806-18550161,18550271-18550907 29 2.4
05_03_0442 + 14040280-14040371,14040449-14040517,14041217-140413... 28 4.2
03_02_0596 + 9714022-9714065,9714799-9714868,9714978-9715883,971... 27 5.6
09_04_0197 - 15522167-15523524,15525416-15525683 27 7.4
08_02_0733 + 20546072-20546325,20546924-20547017,20547441-205476... 27 7.4
02_01_0765 - 5694535-5694644,5695039-5696550,5697229-5697390,569... 27 7.4
09_04_0315 + 16600387-16600557,16600652-16600801,16600874-166008... 27 9.7
08_02_0520 - 18121561-18121821,18122216-18122470,18122560-181227... 27 9.7
>09_06_0308 -
22199389-22199451,22199604-22199924,22200178-22200423,
22202152-22203337,22203487-22203551,22204205-22204486,
22205005-22205106,22205587-22206105
Length = 927
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 67 LPKLIEKDRVAQIFAQSLKVVDETYKENGVTGRGKGDG 104
LP ++ R+ Q+F++ KVVD + TGR +G G
Sbjct: 244 LPWQVDDSRLVQLFSEHGKVVDARVVYDRETGRSRGFG 281
>05_04_0154 - 18549806-18550161,18550271-18550907
Length = 330
Score = 28.7 bits (61), Expect = 2.4
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 44 RSFDNSVLYRMAKFLQGHELHIKLPKLIEKDRVAQI------FAQSLKVVDETYKENG-V 96
RSFD S +++A F H++ P + RV + FA V + G +
Sbjct: 203 RSFDTSSSHQVASFRDALPRHVRAPAVFRCVRVTSVDDGDDEFAYQAAVTINGHMFRGFL 262
Query: 97 TGRGKGDGSGGVA 109
+G DG GG+A
Sbjct: 263 YDQGADDGRGGMA 275
>05_03_0442 +
14040280-14040371,14040449-14040517,14041217-14041329,
14043110-14043209,14044508-14044682,14044768-14044881,
14045157-14045287,14048401-14048464,14048585-14048624,
14049002-14049225,14049634-14049876,14050145-14050313,
14050569-14050873,14051325-14051511,14051622-14051775,
14052145-14052207,14052300-14052396,14052500-14052589
Length = 809
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 85 KVVDETYKENGVTGRGKGDGSGGVALLGM 113
+V+++T+ + +TG G G GS G+ LGM
Sbjct: 473 RVIEKTFNDMSITGSGFGSGS-GLGGLGM 500
>03_02_0596 +
9714022-9714065,9714799-9714868,9714978-9715883,
9715973-9716146,9716260-9716373,9716975-9717033,
9717170-9717236,9717305-9717356,9718070-9718488,
9718786-9718847,9719305-9719374,9719730-9719831,
9719933-9720063,9720492-9720606,9720792-9720827
Length = 806
Score = 27.5 bits (58), Expect = 5.6
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 12 TSALGSFLDKDIDLADGVKLVSIPVPKTLENGRSFD------NSVLYRMAKFLQGHELHI 65
+SAL + L++ IDL D V + + + K LE RS + + L M K H L
Sbjct: 619 SSALDNELEEGIDLQDQVTWLKVELCKLLEEKRSAELRSEELETALMEMVKQDNRHMLSA 678
Query: 66 K-LPKLIEKDRVAQ 78
K L ++ ++ +VA+
Sbjct: 679 KVLIRMEQEQKVAE 692
>09_04_0197 - 15522167-15523524,15525416-15525683
Length = 541
Score = 27.1 bits (57), Expect = 7.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 31 LVSIPVPKTLENGRSFDNSVLYRMAKFLQGH 61
+ S+ VPK ENG F N++L + L G+
Sbjct: 352 MTSLKVPKETENGLKFLNAILQYKFRGLSGY 382
>08_02_0733 +
20546072-20546325,20546924-20547017,20547441-20547624,
20547722-20547831,20548328-20548423,20548525-20548679,
20548743-20548986,20549159-20549314,20549600-20549829,
20552213-20552316,20552420-20552505,20552776-20553066,
20553383-20553475,20553640-20553735,20553838-20553939,
20554196-20554266,20554784-20555035,20555786-20556529,
20557038-20557119,20557192-20557347,20557446-20557655,
20558282-20558665
Length = 1397
Score = 27.1 bits (57), Expect = 7.4
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 66 KLPKLIEKDRVAQIFAQSLKVVDETYKENGVTGRGKGDGS 105
KL KL+E + + ++++KV E Y + G+T G+ DGS
Sbjct: 567 KLAKLVEMESALEDKSKNVKVHAEGYDDAGMTRFGR-DGS 605
>02_01_0765 -
5694535-5694644,5695039-5696550,5697229-5697390,
5698015-5698057
Length = 608
Score = 27.1 bits (57), Expect = 7.4
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 9 VFLTSALGS-FLDKDIDLADGVKLVSIPVPKTLENGR 44
VF++S +G+ L + I +A G+K+VSI KT+ R
Sbjct: 433 VFVSSRIGADLLSEAITVATGLKVVSIHGDKTMNERR 469
>09_04_0315 +
16600387-16600557,16600652-16600801,16600874-16600897,
16601519-16602694,16603120-16603266,16603477-16603752
Length = 647
Score = 26.6 bits (56), Expect = 9.7
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 9 VFLTSALGSFLDKDIDLADGVKLVS 33
V L ALG+FLDK I GV++V+
Sbjct: 94 VGLCQALGAFLDKKIKFVIGVEVVT 118
>08_02_0520 -
18121561-18121821,18122216-18122470,18122560-18122731,
18122824-18123105,18123159-18123292,18123425-18123508,
18123611-18123901,18123982-18124314,18124620-18124750,
18124826-18124930,18125011-18125167,18125248-18125351,
18125442-18125602,18125800-18126116,18126369-18126650,
18127011-18127312,18127609-18127699,18127771-18127824,
18128110-18128186,18128279-18128438,18128545-18128629,
18129059-18129367,18129514-18129890
Length = 1507
Score = 26.6 bits (56), Expect = 9.7
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 38 KTLENGRSFDNSVLYRMAKFLQGHELHIKLPKLIEKDRVA 77
K NG D V R A ++ H+LHI P++ ++ +A
Sbjct: 261 KVTYNGYGMDEFVAQRSAAYISQHDLHI--PEMTVRETLA 298
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.140 0.429
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,983,617
Number of Sequences: 37544
Number of extensions: 189053
Number of successful extensions: 727
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 722
Number of HSP's gapped (non-prelim): 10
length of query: 163
length of database: 14,793,348
effective HSP length: 77
effective length of query: 86
effective length of database: 11,902,460
effective search space: 1023611560
effective search space used: 1023611560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)
- SilkBase 1999-2023 -