Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000043-TA|BGIBMGA000043-PA|undefined
         (163 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC141813-1|AAI41814.1|  440|Homo sapiens Unknown (protein for MG...    30   3.3  
AF334585-1|AAK01445.1| 1349|Homo sapiens NIR3 protein.                 30   3.3  
AB040890-1|BAA95981.2| 1359|Homo sapiens KIAA1457 protein protein.     30   3.3  
D21090-1|BAA04652.1|  409|Homo sapiens XP-C repair complementing...    29   5.8  
BC020973-1|AAH20973.1|  409|Homo sapiens RAD23B protein protein.       29   5.8  
AY313777-1|AAP81008.1|  337|Homo sapiens RAD23-like protein B pr...    29   5.8  
AY165178-1|AAN47194.1|  409|Homo sapiens RAD23 homolog B (S. cer...    29   5.8  
AL137852-2|CAD13275.1|  409|Homo sapiens RAD23 homolog B (S. cer...    29   5.8  
AK223479-1|BAD97199.1|  409|Homo sapiens UV excision repair prot...    29   5.8  

>BC141813-1|AAI41814.1|  440|Homo sapiens Unknown (protein for
           MGC:164844) protein.
          Length = 440

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 4/50 (8%)

Query: 62  ELHIKLPKLIEKDRVAQIFAQSLKVVDETYKE-NGV---TGRGKGDGSGG 107
           E  I LP  +E+ R+AQ++    K  +ETY E +GV     R   DG GG
Sbjct: 5   EYRIPLPMTVEEYRIAQLYMIQKKSRNETYGEGSGVEILENRPYTDGPGG 54


>AF334585-1|AAK01445.1| 1349|Homo sapiens NIR3 protein.
          Length = 1349

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 4/50 (8%)

Query: 62  ELHIKLPKLIEKDRVAQIFAQSLKVVDETYKE-NGV---TGRGKGDGSGG 107
           E  I LP  +E+ R+AQ++    K  +ETY E +GV     R   DG GG
Sbjct: 5   EYRIPLPMTVEEYRIAQLYMIQKKSRNETYGEGSGVEILENRPYTDGPGG 54


>AB040890-1|BAA95981.2| 1359|Homo sapiens KIAA1457 protein protein.
          Length = 1359

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 4/50 (8%)

Query: 62  ELHIKLPKLIEKDRVAQIFAQSLKVVDETYKE-NGV---TGRGKGDGSGG 107
           E  I LP  +E+ R+AQ++    K  +ETY E +GV     R   DG GG
Sbjct: 21  EYRIPLPMTVEEYRIAQLYMIQKKSRNETYGEGSGVEILENRPYTDGPGG 70


>D21090-1|BAA04652.1|  409|Homo sapiens XP-C repair complementing
           protein (p58/HHR23B) protein.
          Length = 409

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 2/45 (4%)

Query: 68  PKLIEKDRVAQIFAQSLKVVDETYKENGVTGRGKGDGSGGVALLG 112
           P+L+++  ++Q     +++++E  +E G  G G G GSGG+A  G
Sbjct: 311 PQLLQQ--ISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAG 353


>BC020973-1|AAH20973.1|  409|Homo sapiens RAD23B protein protein.
          Length = 409

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 2/45 (4%)

Query: 68  PKLIEKDRVAQIFAQSLKVVDETYKENGVTGRGKGDGSGGVALLG 112
           P+L+++  ++Q     +++++E  +E G  G G G GSGG+A  G
Sbjct: 311 PQLLQQ--ISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAG 353


>AY313777-1|AAP81008.1|  337|Homo sapiens RAD23-like protein B
           protein.
          Length = 337

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 2/45 (4%)

Query: 68  PKLIEKDRVAQIFAQSLKVVDETYKENGVTGRGKGDGSGGVALLG 112
           P+L+++  ++Q     +++++E  +E G  G G G GSGG+A  G
Sbjct: 239 PQLLQQ--ISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAG 281


>AY165178-1|AAN47194.1|  409|Homo sapiens RAD23 homolog B (S.
           cerevisiae) protein.
          Length = 409

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 2/45 (4%)

Query: 68  PKLIEKDRVAQIFAQSLKVVDETYKENGVTGRGKGDGSGGVALLG 112
           P+L+++  ++Q     +++++E  +E G  G G G GSGG+A  G
Sbjct: 311 PQLLQQ--ISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAG 353


>AL137852-2|CAD13275.1|  409|Homo sapiens RAD23 homolog B (S.
           cerevisiae) protein.
          Length = 409

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 2/45 (4%)

Query: 68  PKLIEKDRVAQIFAQSLKVVDETYKENGVTGRGKGDGSGGVALLG 112
           P+L+++  ++Q     +++++E  +E G  G G G GSGG+A  G
Sbjct: 311 PQLLQQ--ISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAG 353


>AK223479-1|BAD97199.1|  409|Homo sapiens UV excision repair protein
           RAD23 homolog B variant protein.
          Length = 409

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 2/45 (4%)

Query: 68  PKLIEKDRVAQIFAQSLKVVDETYKENGVTGRGKGDGSGGVALLG 112
           P+L+++  ++Q     +++++E  +E G  G G G GSGG+A  G
Sbjct: 311 PQLLQQ--ISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAG 353


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.321    0.140    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,335,593
Number of Sequences: 224733
Number of extensions: 777348
Number of successful extensions: 2176
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2176
Number of HSP's gapped (non-prelim): 9
length of query: 163
length of database: 73,234,838
effective HSP length: 84
effective length of query: 79
effective length of database: 54,357,266
effective search space: 4294224014
effective search space used: 4294224014
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)