Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000043-TA|BGIBMGA000043-PA|undefined
         (163 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74600.1 68414.m08641 pentatricopeptide (PPR) repeat-containi...    29   2.0  
At1g47128.1 68414.m05222 cysteine proteinase (RD21A) / thiol pro...    28   3.5  
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ...    27   4.7  
At1g75430.1 68414.m08762 homeodomain-containing protein contains...    27   6.2  
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ...    27   8.2  
At2g42230.2 68415.m05226 tubulin-specific chaperone C-related we...    27   8.2  
At2g42230.1 68415.m05227 tubulin-specific chaperone C-related we...    27   8.2  

>At1g74600.1 68414.m08641 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 895

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 3   RFLVPF-VFLTSALGSFLDKDIDLADGVKLV-SIPVP 37
           R+L+PF VFLT +L S+      +AD  KL  +IP P
Sbjct: 77  RYLLPFDVFLTKSLLSWYSNSGSMADAAKLFDTIPQP 113


>At1g47128.1 68414.m05222 cysteine proteinase (RD21A) / thiol
          protease identical to SP|P43297 Cysteine proteinase
          RD21A precursor (EC 3.4.22.-) {Arabidopsis thaliana},
          thiol protease RD21A SP:P43297 from [Arabidopsis
          thaliana]
          Length = 462

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 12/25 (48%), Positives = 18/25 (72%)

Query: 70 LIEKDRVAQIFAQSLKVVDETYKEN 94
          L+EKDR  +IF  +L+ VDE  ++N
Sbjct: 66 LVEKDRRFEIFKDNLRFVDEHNEKN 90


>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein RNP-T, putative /
           RNA-binding protein 1/2/3, putative / RNA-binding
           protein cp31, putative similar to SP|Q04836 31 kDa
           ribonucleoprotein, chloroplast precursor (RNA-binding
           protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
           thaliana}; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 289

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 13/38 (34%), Positives = 22/38 (57%)

Query: 67  LPKLIEKDRVAQIFAQSLKVVDETYKENGVTGRGKGDG 104
           LP  ++  R+ ++F++  KVVD     +  TGR +G G
Sbjct: 214 LPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFG 251


>At1g75430.1 68414.m08762 homeodomain-containing protein contains
           'Homeobox' domain signature, Prosite:PS00027
          Length = 297

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 59  QGHELHIKLPKLIE-KDRVAQIFAQSLKVVDETYKE-NGVTGRGKGDGSGGVALLGM 113
           + HE+HIK+ KL+    +V + F Q    +++       + G G      G+AL  M
Sbjct: 81  ENHEIHIKITKLLSLLQQVEERFEQYCNQLEQVISSFEEIAGEGSSKVYTGLALQAM 137


>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein RNP-T, putative /
           RNA-binding protein 1/2/3, putative / RNA-binding
           protein cp31, putative similar to SP|Q04836 31 kDa
           ribonucleoprotein, chloroplast precursor (RNA-binding
           protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
           (RNA-binding protein cp31) {Arabidopsis thaliana};
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 329

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 13/38 (34%), Positives = 22/38 (57%)

Query: 67  LPKLIEKDRVAQIFAQSLKVVDETYKENGVTGRGKGDG 104
           LP  ++  R+ Q+F++  KVV+     +  TGR +G G
Sbjct: 251 LPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFG 288


>At2g42230.2 68415.m05226 tubulin-specific chaperone C-related weak
           similarity to Tubulin-specific chaperone C
           (Tubulin-folding cofactor C) (CFC) (Swiss-Prot:Q15814)
           [Homo sapiens]
          Length = 568

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 16/41 (39%), Positives = 18/41 (43%)

Query: 4   FLVPFVFLTSALGSFLDKDIDLADGVKLVSIPVPKTLENGR 44
           FL+P  F   A+GS  D    L D  K V     K LE  R
Sbjct: 485 FLIPNWFAGEAIGSTKDNPFPLPDAYKAVQQTNLKNLEETR 525


>At2g42230.1 68415.m05227 tubulin-specific chaperone C-related weak
           similarity to Tubulin-specific chaperone C
           (Tubulin-folding cofactor C) (CFC) (Swiss-Prot:Q15814)
           [Homo sapiens]
          Length = 562

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 16/41 (39%), Positives = 18/41 (43%)

Query: 4   FLVPFVFLTSALGSFLDKDIDLADGVKLVSIPVPKTLENGR 44
           FL+P  F   A+GS  D    L D  K V     K LE  R
Sbjct: 485 FLIPNWFAGEAIGSTKDNPFPLPDAYKAVQQTNLKNLEETR 525


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.140    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,895,057
Number of Sequences: 28952
Number of extensions: 144474
Number of successful extensions: 422
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 417
Number of HSP's gapped (non-prelim): 7
length of query: 163
length of database: 12,070,560
effective HSP length: 76
effective length of query: 87
effective length of database: 9,870,208
effective search space: 858708096
effective search space used: 858708096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)