GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000043-TA|BGIBMGA000043-PA|undefined
         (163 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-424|AAF51898.1|  302|Drosophila melanogaster CG15596-PA...    30   1.3  
AE014298-979|AAF46221.2| 1027|Drosophila melanogaster CG14431-PA...    29   2.3  
M74329-1|AAA28747.1| 2483|Drosophila melanogaster pcx protein.         27   9.4  
AE014298-365|AAF45756.2| 3433|Drosophila melanogaster CG3443-PB ...    27   9.4  

>AE014297-424|AAF51898.1|  302|Drosophila melanogaster CG15596-PA
           protein.
          Length = 302

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 11/30 (36%), Positives = 19/30 (63%)

Query: 42  NGRSFDNSVLYRMAKFLQGHELHIKLPKLI 71
           +G+S D  +L R   F+  H+L + LP+L+
Sbjct: 113 SGKSLDALLLERFLNFVHSHQLQVNLPRLL 142


>AE014298-979|AAF46221.2| 1027|Drosophila melanogaster CG14431-PA
           protein.
          Length = 1027

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/41 (31%), Positives = 17/41 (41%)

Query: 95  GVTGRGKGDGSGGVALLGMMFAKXXXXXXXXXXXXXTMKVN 135
           GV GRG G G GG    G  +A+             T+ +N
Sbjct: 658 GVAGRGGGAGKGGSGRRGPAYAQTSSSSATIGAGTGTISIN 698


>M74329-1|AAA28747.1| 2483|Drosophila melanogaster pcx protein.
          Length = 2483

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 61  HELHIKLP-KLIEKDRVAQIFAQSLKVVDETYKENGVTGRGKGDGSGGVA 109
           H LH  L   +I KD  + + A  L  V +      VTG G   G GG A
Sbjct: 46  HHLHHHLGGAIIRKDPTSTMSALQLAAVTQPGTGGSVTGGGGAAGGGGSA 95


>AE014298-365|AAF45756.2| 3433|Drosophila melanogaster CG3443-PB
           protein.
          Length = 3433

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 61  HELHIKLP-KLIEKDRVAQIFAQSLKVVDETYKENGVTGRGKGDGSGGVA 109
           H LH  L   +I KD  + + A  L  V +      VTG G   G GG A
Sbjct: 510 HHLHHHLGGAIIRKDPTSTMSALQLAAVTQPGTGGSVTGGGGAAGGGGSA 559


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.321    0.140    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,879,315
Number of Sequences: 52641
Number of extensions: 292679
Number of successful extensions: 1304
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1302
Number of HSP's gapped (non-prelim): 4
length of query: 163
length of database: 24,830,863
effective HSP length: 79
effective length of query: 84
effective length of database: 20,672,224
effective search space: 1736466816
effective search space used: 1736466816
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)