GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000043-TA|BGIBMGA000043-PA|undefined
         (163 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043702-8|ABD94094.1|  156|Caenorhabditis elegans Hypothetical ...    31   0.40 
AF026215-4|AAB71322.1|  843|Caenorhabditis elegans Hypothetical ...    28   3.8  
AF016421-5|AAO12429.1| 1008|Caenorhabditis elegans Hypothetical ...    28   3.8  
AF016421-4|AAC25789.1| 1067|Caenorhabditis elegans Hypothetical ...    28   3.8  
AF016421-3|AAM45374.1| 1051|Caenorhabditis elegans Hypothetical ...    28   3.8  
AC084158-18|AAK68583.1|  300|Caenorhabditis elegans Hypothetical...    27   6.6  
Z99270-1|CAB16470.3|  497|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z92793-2|CAD56589.1|  684|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z92793-1|CAB07229.1|  681|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z72503-11|CAD56560.1|  684|Caenorhabditis elegans Hypothetical p...    27   8.7  
Z72503-10|CAA96601.1|  681|Caenorhabditis elegans Hypothetical p...    27   8.7  
AC006673-3|AAF39929.1|  861|Caenorhabditis elegans Hypothetical ...    27   8.7  

>AF043702-8|ABD94094.1|  156|Caenorhabditis elegans Hypothetical
           protein W03D8.5 protein.
          Length = 156

 Score = 31.1 bits (67), Expect = 0.40
 Identities = 17/63 (26%), Positives = 34/63 (53%)

Query: 23  IDLADGVKLVSIPVPKTLENGRSFDNSVLYRMAKFLQGHELHIKLPKLIEKDRVAQIFAQ 82
           + L+D +     PV   LE G+S D +V +R ++ ++G  + +      ++D+V ++F Q
Sbjct: 81  LKLSDNIAFQLNPVFGVLEPGKSVDVAVTHRKSEPMEGKLIIVNSLLTGDEDKVKELFKQ 140

Query: 83  SLK 85
             K
Sbjct: 141 ITK 143


>AF026215-4|AAB71322.1|  843|Caenorhabditis elegans Hypothetical
           protein F09G2.4 protein.
          Length = 843

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 42  NGRSFDNSVLYRMAKFLQGHELHIKLPKLIEKDRVAQIFAQSLKVV 87
           NG SFDN   +     L     HI LP++  KDR  Q+  + L+ V
Sbjct: 184 NGCSFDN---FNRPHLLITGAHHISLPQMRRKDRDEQLVTKILRTV 226


>AF016421-5|AAO12429.1| 1008|Caenorhabditis elegans Hypothetical
           protein F44E7.4c protein.
          Length = 1008

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 37  PKTLENG-RSFDNSVLYRMAKFLQGHELHIKLPKLIEKDRVAQIFAQSLKVVDETYKENG 95
           PKTL +  R F N +  R   F +  E  + L K I+KD V ++F + ++      ++  
Sbjct: 880 PKTLSSRFRRFWNEIECRQYNFARREE-EVALLKTIKKDDVLELFDKKIRKDAAERRKLA 938

Query: 96  VTGRGKGDGSGGV 108
           V   GK +    V
Sbjct: 939 VFVHGKNEDQEAV 951


>AF016421-4|AAC25789.1| 1067|Caenorhabditis elegans Hypothetical
            protein F44E7.4a protein.
          Length = 1067

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 37   PKTLENG-RSFDNSVLYRMAKFLQGHELHIKLPKLIEKDRVAQIFAQSLKVVDETYKENG 95
            PKTL +  R F N +  R   F +  E  + L K I+KD V ++F + ++      ++  
Sbjct: 939  PKTLSSRFRRFWNEIECRQYNFARREE-EVALLKTIKKDDVLELFDKKIRKDAAERRKLA 997

Query: 96   VTGRGKGDGSGGV 108
            V   GK +    V
Sbjct: 998  VFVHGKNEDQEAV 1010


>AF016421-3|AAM45374.1| 1051|Caenorhabditis elegans Hypothetical
           protein F44E7.4b protein.
          Length = 1051

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 37  PKTLENG-RSFDNSVLYRMAKFLQGHELHIKLPKLIEKDRVAQIFAQSLKVVDETYKENG 95
           PKTL +  R F N +  R   F +  E  + L K I+KD V ++F + ++      ++  
Sbjct: 923 PKTLSSRFRRFWNEIECRQYNFARREE-EVALLKTIKKDDVLELFDKKIRKDAAERRKLA 981

Query: 96  VTGRGKGDGSGGV 108
           V   GK +    V
Sbjct: 982 VFVHGKNEDQEAV 994


>AC084158-18|AAK68583.1|  300|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.9 protein.
          Length = 300

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 68  PKLIEKDRVAQIFAQSLKV--VDETYKENGVTGRGKGD-GSGGVAL 110
           P  IE D V      S+ V   DE Y +    GR K D G GGV L
Sbjct: 194 PSNIESDEVYSNMTCSMNVDICDENYCKKLAAGRKKADSGDGGVQL 239


>Z99270-1|CAB16470.3|  497|Caenorhabditis elegans Hypothetical
           protein Y37A1A.3 protein.
          Length = 497

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 2   YRFLVPFVFLTSALGSFLDKDIDLADGVKLVSI--PVPKTLENGRSF--DNSVLYRMAKF 57
           + F+V   FL SA G+FL K +       +VS+   V  ++    SF   N +L+  A+F
Sbjct: 78  WSFIVAIFFLGSATGAFLIKTVAERKKGVIVSLFAQVTSSMLTIVSFWIVNHILFIFARF 137

Query: 58  LQGHELHIKL 67
           L G  + I +
Sbjct: 138 LMGVGITISM 147


>Z92793-2|CAD56589.1|  684|Caenorhabditis elegans Hypothetical
           protein C26C6.5b protein.
          Length = 684

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 21  KDIDLADGVKLVSIPVPKTLENGRSFDNS 49
           +D +L D +   S P  + LENG+ FD +
Sbjct: 110 EDEELGDEINEQSAPKKRRLENGKEFDQT 138


>Z92793-1|CAB07229.1|  681|Caenorhabditis elegans Hypothetical
           protein C26C6.5a protein.
          Length = 681

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 21  KDIDLADGVKLVSIPVPKTLENGRSFDNS 49
           +D +L D +   S P  + LENG+ FD +
Sbjct: 110 EDEELGDEINEQSAPKKRRLENGKEFDQT 138


>Z72503-11|CAD56560.1|  684|Caenorhabditis elegans Hypothetical
           protein C26C6.5b protein.
          Length = 684

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 21  KDIDLADGVKLVSIPVPKTLENGRSFDNS 49
           +D +L D +   S P  + LENG+ FD +
Sbjct: 110 EDEELGDEINEQSAPKKRRLENGKEFDQT 138


>Z72503-10|CAA96601.1|  681|Caenorhabditis elegans Hypothetical
           protein C26C6.5a protein.
          Length = 681

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 21  KDIDLADGVKLVSIPVPKTLENGRSFDNS 49
           +D +L D +   S P  + LENG+ FD +
Sbjct: 110 EDEELGDEINEQSAPKKRRLENGKEFDQT 138


>AC006673-3|AAF39929.1|  861|Caenorhabditis elegans Hypothetical
          protein K09D9.11 protein.
          Length = 861

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 15/48 (31%), Positives = 22/48 (45%)

Query: 2  YRFLVPFVFLTSALGSFLDKDIDLADGVKLVSIPVPKTLENGRSFDNS 49
          +R L       S   S + KD+ + D +    +  PK LEN   FD+S
Sbjct: 35 FRILSRVTNAISIQASVIRKDVKIRDVISEFLLITPKLLENVVEFDSS 82


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.140    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,930,941
Number of Sequences: 27539
Number of extensions: 138868
Number of successful extensions: 390
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 384
Number of HSP's gapped (non-prelim): 12
length of query: 163
length of database: 12,573,161
effective HSP length: 76
effective length of query: 87
effective length of database: 10,480,197
effective search space: 911777139
effective search space used: 911777139
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)