Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000042-TA|BGIBMGA000042-PA|IPR012464|Protein of unknown
function DUF1676
         (212 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    27   2.7  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    25   6.3  

>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 15/37 (40%), Positives = 20/37 (54%)

Query: 91   IEDQAQQLIMDKLWNFATTRSLRYRLLNNADLVMSGK 127
            IED A +L+ +K  N A    L YRL N  + V+  K
Sbjct: 3042 IEDMALKLLSEKYDNEAYQAELFYRLSNCVEKVLHNK 3078


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/38 (34%), Positives = 23/38 (60%)

Query: 102 KLWNFATTRSLRYRLLNNADLVMSGKENNDGNFGIGVS 139
           +L+   T+RSLR   L   DL++S ++N   +  +G+S
Sbjct: 187 RLYTLPTSRSLRQVYLILRDLLLSMEKNASSSDDLGLS 224


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 835,088
Number of Sequences: 5004
Number of extensions: 30110
Number of successful extensions: 68
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66
Number of HSP's gapped (non-prelim): 2
length of query: 212
length of database: 2,362,478
effective HSP length: 70
effective length of query: 142
effective length of database: 2,012,198
effective search space: 285732116
effective search space used: 285732116
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)