Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000042-TA|BGIBMGA000042-PA|IPR012464|Protein of unknown
function DUF1676
         (212 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1276| Best HMM Match : MOZ_SAS (HMM E-Value=0)                      31   0.94 
SB_38518| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_33841| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_25442| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_19346| Best HMM Match : ATP-synt_E_2 (HMM E-Value=2.4)              27   8.8  

>SB_1276| Best HMM Match : MOZ_SAS (HMM E-Value=0)
          Length = 475

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 14/56 (25%), Positives = 31/56 (55%)

Query: 61  SDDVLIVDESNGAAASLPVKPESLARAGSTIEDQAQQLIMDKLWNFATTRSLRYRL 116
           SD++LI  + +    + P K  SL + GS ++D++   I+ ++ N    +  ++R+
Sbjct: 149 SDEILIDSQDSPTKDTPPTKMSSLRQHGSLVQDRSNDDIVTRMKNIQMVQLGKFRI 204


>SB_38518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1399

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 3/102 (2%)

Query: 10   SISGTPSIRPSEETIKRGLSAKCAARDTSSCIVHELVGYVDRMLKTAAVQISDDVLIVDE 69
            S+S   +   S E   +  S   + R TSS    +  G   R +   + + SDDV++  +
Sbjct: 1235 SLSRNSASSHSREDRGKESSRTSSTRRTSSDKYAKTTGKFSREIDEDSEEDSDDVIVTSK 1294

Query: 70   SNGAAASLPVKPESLARAGSTIEDQAQQLIMDKLWNFATTRS 111
                A  +  K  S +R+G + E   ++  MD L++ + ++S
Sbjct: 1295 ---RAVPVGRKDSSTSRSGVSKEPARRESFMDSLFSSSKSKS 1333


>SB_33841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 7/99 (7%)

Query: 51  RMLKTAAVQISDDVLIVDESNGAAASLPVKPESLARAGST-IEDQAQQLIM----DKLWN 105
           R LK +A +IS++  +    +    +LP + + + R G T IE+  ++  +     K+  
Sbjct: 179 RDLKMSAKEISNNCNVHAHEDLVEPALPARDQKVPRKGDTEIENDNKKPALVTCDQKVPE 238

Query: 106 -FATTRSLRYRLLNNADLVMSGKENNDGNFGIGVSLKAP 143
             ++TR+  Y L N  D  +S  + ++ +F I VS+ AP
Sbjct: 239 MISSTRNDAYALDNLMDQALSASDQDEPDF-IAVSVFAP 276


>SB_25442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1010

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 126 GKENNDGNFGIGVSLKAPKAIETGRRQNKIGPFIGL 161
           G +NN   F I +SL+ P   +T + +++  PF  L
Sbjct: 930 GDDNNSPLFAIDLSLEIPPEFQTRKAKSRENPFCQL 965


>SB_19346| Best HMM Match : ATP-synt_E_2 (HMM E-Value=2.4)
          Length = 528

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 22  ETIKRGLSAKCAARDTSSCIVHEL 45
           E IK  L   C   + +SC+VHEL
Sbjct: 337 EEIKNNLKEHCTKFECNSCLVHEL 360


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,018,717
Number of Sequences: 59808
Number of extensions: 212669
Number of successful extensions: 430
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 426
Number of HSP's gapped (non-prelim): 5
length of query: 212
length of database: 16,821,457
effective HSP length: 79
effective length of query: 133
effective length of database: 12,096,625
effective search space: 1608851125
effective search space used: 1608851125
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)