GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000042-TA|BGIBMGA000042-PA|IPR012464|Protein of unknown
function DUF1676
         (212 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    23   2.4  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   2.4  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   7.3  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
          protein.
          Length = 302

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 21 EETIKRGLSAKCAARDTSSCIV 42
          + +I+R     C A+D  SCI+
Sbjct: 63 KRSIRRNRQYVCKAKDEGSCII 84


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
          protein.
          Length = 406

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 21 EETIKRGLSAKCAARDTSSCIV 42
          + +I+R     C A+D  SCI+
Sbjct: 63 KRSIRRNRQYVCKAKDEGSCII 84


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 124 MSGKENNDGNFGIGVSLKAPKAIETGR 150
           +SGK +ND       SL+ PK    G+
Sbjct: 172 LSGKSDNDAEEYDEQSLRVPKVNSHGK 198


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.134    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,647
Number of Sequences: 317
Number of extensions: 1368
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 212
length of database: 114,650
effective HSP length: 54
effective length of query: 158
effective length of database: 97,532
effective search space: 15410056
effective search space used: 15410056
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 41 (20.6 bits)