GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000042-TA|BGIBMGA000042-PA|IPR012464|Protein of unknown
function DUF1676
         (212 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0097 - 1450544-1452058                                           29   2.8  
05_06_0034 + 25082875-25084113                                         29   2.8  
03_05_0780 + 27646936-27647084,27647168-27647289,27649380-276494...    27   8.6  
01_05_0162 + 18759647-18759663,18760128-18760131,18760270-187606...    27   8.6  

>09_01_0097 - 1450544-1452058
          Length = 504

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 5/64 (7%)

Query: 14  TPSIRPSEETIKRGLSAKCAARDTSSCIVHELVGYVDRMLKTAAVQISDDVLIVDESNGA 73
           +P IR S + + R L    AA  +SS  +  LVG+++  L    V+  D     DE++  
Sbjct: 444 SPEIRASAQAMARQLRLDVAAGGSSSSELQRLVGFINE-LSAVHVRSRD----ADENSSP 498

Query: 74  AASL 77
           A SL
Sbjct: 499 AVSL 502


>05_06_0034 + 25082875-25084113
          Length = 412

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 43  HELVGYVDRMLKTAAVQISDDVLIVDESNGAAASLPVKPESLARAGSTIEDQAQQLIM 100
           H+LV  VD +L      I DD      S+ + ++ P  P + ARA  T+  Q  ++++
Sbjct: 67  HDLVPLVDSVLVRVDCVIPDDPASSSSSSSSPSAAPSSPTASARA-RTVFSQIARIVL 123


>03_05_0780 +
           27646936-27647084,27647168-27647289,27649380-27649458,
           27650346-27650427,27650483-27650600,27650695-27651050,
           27651404-27652222,27652846-27653265,27653426-27653437
          Length = 718

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/54 (25%), Positives = 21/54 (38%)

Query: 63  DVLIVDESNGAAASLPVKPESLARAGSTIEDQAQQLIMDKLWNFATTRSLRYRL 116
           D L   ++ G  ++LP  PES    G     Q  Q +   LW       ++  L
Sbjct: 171 DSLFCKQNRGTGSALPTPPESAYGRGLPSGWQDNQKVWKSLWKIVAPGKMKINL 224


>01_05_0162 +
           18759647-18759663,18760128-18760131,18760270-18760617,
           18760801-18761016,18763367-18763435,18763560-18764209,
           18764993-18765089,18765170-18765223,18765305-18765435,
           18766818-18767008,18767937-18768574
          Length = 804

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/34 (32%), Positives = 21/34 (61%)

Query: 89  STIEDQAQQLIMDKLWNFATTRSLRYRLLNNADL 122
           STI  +  +  +  +WNF+   +LRY++L++  L
Sbjct: 118 STITPEMLEQSLCTIWNFSIEENLRYKILSSGML 151


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,447,361
Number of Sequences: 37544
Number of extensions: 204140
Number of successful extensions: 568
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 564
Number of HSP's gapped (non-prelim): 4
length of query: 212
length of database: 14,793,348
effective HSP length: 79
effective length of query: 133
effective length of database: 11,827,372
effective search space: 1573040476
effective search space used: 1573040476
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)