GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000042-TA|BGIBMGA000042-PA|IPR012464|Protein of unknown
function DUF1676
         (212 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U39995-6|AAF99997.1|  452|Caenorhabditis elegans Hypothetical pr...    27   7.6  

>U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical
           protein K10D2.3 protein.
          Length = 1425

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 11  ISGTPSIRPSEETIKRGLSAKCAAR-DTSSCIVHELVGYVDRMLKTAAVQISDDVLIVDE 69
           + G  S+   +  +K GL+ K AA  D  S +  +   +++R  K   + +S+D   +DE
Sbjct: 748 VYGRNSLLRFKRVLKPGLNGKMAASMDGLSFVTKKGKKFINRWKKANVIILSEDSSEIDE 807

Query: 70  SNGAAAS 76
              AA S
Sbjct: 808 KTKAADS 814


>U39995-6|AAF99997.1|  452|Caenorhabditis elegans Hypothetical
           protein M60.7 protein.
          Length = 452

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 92  EDQAQQLIMDKLWNFATTRSLRYRLLNNADL 122
           + Q Q+ + DK+ N+A    +RY LL  A +
Sbjct: 11  QSQLQRALADKITNYAPIEEIRYILLRGAQV 41


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.134    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,466,415
Number of Sequences: 27539
Number of extensions: 161132
Number of successful extensions: 380
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 379
Number of HSP's gapped (non-prelim): 2
length of query: 212
length of database: 12,573,161
effective HSP length: 78
effective length of query: 134
effective length of database: 10,425,119
effective search space: 1396965946
effective search space used: 1396965946
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)