GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000042-TA|BGIBMGA000042-PA|IPR012464|Protein of unknown
function DUF1676
         (212 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g08220.1 68414.m00908 expressed protein                             30   1.3  
At1g35660.1 68414.m04432 expressed protein                             29   3.1  
At4g31570.1 68417.m04483 expressed protein                             28   5.4  
At3g28270.2 68416.m03531 expressed protein similar to At14a prot...    28   5.4  
At3g28270.1 68416.m03530 expressed protein similar to At14a prot...    28   5.4  
At5g55060.1 68418.m06862 expressed protein                             27   9.5  

>At1g08220.1 68414.m00908 expressed protein
          Length = 323

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 36  DTSSCIVHELVGYVDRMLKTAAVQISDDVLIVDESNGAAASLPVKPES 83
           DT +C   +L+   ++ +  AA  I   VL V  SNG +  LP+ P S
Sbjct: 132 DTVAC--RDLIAAANKTIIPAASAIKFPVLAVTFSNGKSLKLPIAPNS 177


>At1g35660.1 68414.m04432 expressed protein
          Length = 1155

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 22/77 (28%), Positives = 37/77 (48%)

Query: 12  SGTPSIRPSEETIKRGLSAKCAARDTSSCIVHELVGYVDRMLKTAAVQISDDVLIVDESN 71
           S T ++ PS+ET+      +    +T   +   L  + D +L  AAV+      I  E+N
Sbjct: 60  SFTSALLPSQETVVTAPRYQMLPMETDLNLPPLLTDFPDNVLPLAAVKSRITGDISKEAN 119

Query: 72  GAAASLPVKPESLARAG 88
              ++L  K E+LA +G
Sbjct: 120 VITSNLSKKCEALAVSG 136


>At4g31570.1 68417.m04483 expressed protein
          Length = 2712

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 20/88 (22%), Positives = 37/88 (42%)

Query: 6    LRNGSISGTPSIRPSEETIKRGLSAKCAARDTSSCIVHELVGYVDRMLKTAAVQISDDVL 65
            L  G  S    +R  E T+++ L  K + +D S+    E+V     + K     I   V 
Sbjct: 2554 LLEGERSRVAELRQKEATLEKFLLEKESQQDISTSSTSEIVEVEPLINKWTKTSIPSQVR 2613

Query: 66   IVDESNGAAASLPVKPESLARAGSTIED 93
             + + N    ++ +  +   ++GS  ED
Sbjct: 2614 SLRKGNMDQVAISIDADQTDQSGSLEED 2641


>At3g28270.2 68416.m03531 expressed protein similar to At14a protein
           (GI:11994571 and GI:11994573) [Arabidopsis thaliana]
          Length = 374

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/47 (27%), Positives = 23/47 (48%)

Query: 8   NGSISGTPSIRPSEETIKRGLSAKCAARDTSSCIVHELVGYVDRMLK 54
           N  + G   +   EE++++G+     A +T S +V  L   +  MLK
Sbjct: 268 NKQLEGLKKVEEIEESVEKGIKTNEEATETVSILVDGLEDRIKNMLK 314


>At3g28270.1 68416.m03530 expressed protein similar to At14a protein
           (GI:11994571 and GI:11994573) [Arabidopsis thaliana]
          Length = 374

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/47 (27%), Positives = 23/47 (48%)

Query: 8   NGSISGTPSIRPSEETIKRGLSAKCAARDTSSCIVHELVGYVDRMLK 54
           N  + G   +   EE++++G+     A +T S +V  L   +  MLK
Sbjct: 268 NKQLEGLKKVEEIEESVEKGIKTNEEATETVSILVDGLEDRIKNMLK 314


>At5g55060.1 68418.m06862 expressed protein
          Length = 645

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/59 (28%), Positives = 29/59 (49%)

Query: 115 RLLNNADLVMSGKENNDGNFGIGVSLKAPKAIETGRRQNKIGPFIGLAAMKIGVLGALF 173
           R  N  D V S   ++      G+SL A K++  G +++K+G   G     + ++ ALF
Sbjct: 118 RAKNVKDFVASSGSSSPVRERGGLSLSAVKSLVLGEKEDKLGFDSGDEDKLVSLINALF 176


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,438,415
Number of Sequences: 28952
Number of extensions: 165540
Number of successful extensions: 425
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 419
Number of HSP's gapped (non-prelim): 6
length of query: 212
length of database: 12,070,560
effective HSP length: 78
effective length of query: 134
effective length of database: 9,812,304
effective search space: 1314848736
effective search space used: 1314848736
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)