Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000041-TA|BGIBMGA000041-PA|undefined
         (60 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54947| Best HMM Match : rve (HMM E-Value=2.3e-31)                   25   8.8  

>SB_54947| Best HMM Match : rve (HMM E-Value=2.3e-31)
          Length = 1283

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 40   YSPKNRPSPAPMYITAPG 57
            Y P  + +P P+Y TAPG
Sbjct: 1174 YIPSKQLAPKPLYQTAPG 1191


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.313    0.126    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,227,894
Number of Sequences: 59808
Number of extensions: 25215
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48
Number of HSP's gapped (non-prelim): 1
length of query: 60
length of database: 16,821,457
effective HSP length: 39
effective length of query: 21
effective length of database: 14,488,945
effective search space: 304267845
effective search space used: 304267845
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 52 (25.0 bits)