Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000041-TA|BGIBMGA000041-PA|undefined
         (60 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC064401-1|AAH64401.1|  547|Homo sapiens TJAP1 protein protein.        27   7.0  
BC046239-1|AAH46239.1|  557|Homo sapiens TJAP1 protein protein.        27   7.0  
AL355802-3|CAI42618.1|  557|Homo sapiens RP3-337H4.1 protein.          27   7.0  
AL355802-2|CAI42619.1|  547|Homo sapiens RP3-337H4.1 protein.          27   7.0  
AK024269-1|BAB14867.1|  547|Homo sapiens protein ( Homo sapiens ...    27   7.0  

>BC064401-1|AAH64401.1|  547|Homo sapiens TJAP1 protein protein.
          Length = 547

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 10/20 (50%), Positives = 16/20 (80%)

Query: 41  SPKNRPSPAPMYITAPGAVA 60
           SP ++PSPAP+ ++AP + A
Sbjct: 375 SPHHQPSPAPLTLSAPASSA 394


>BC046239-1|AAH46239.1|  557|Homo sapiens TJAP1 protein protein.
          Length = 557

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 10/20 (50%), Positives = 16/20 (80%)

Query: 41  SPKNRPSPAPMYITAPGAVA 60
           SP ++PSPAP+ ++AP + A
Sbjct: 385 SPHHQPSPAPLTLSAPASSA 404


>AL355802-3|CAI42618.1|  557|Homo sapiens RP3-337H4.1 protein.
          Length = 557

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 10/20 (50%), Positives = 16/20 (80%)

Query: 41  SPKNRPSPAPMYITAPGAVA 60
           SP ++PSPAP+ ++AP + A
Sbjct: 385 SPHHQPSPAPLTLSAPASSA 404


>AL355802-2|CAI42619.1|  547|Homo sapiens RP3-337H4.1 protein.
          Length = 547

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 10/20 (50%), Positives = 16/20 (80%)

Query: 41  SPKNRPSPAPMYITAPGAVA 60
           SP ++PSPAP+ ++AP + A
Sbjct: 375 SPHHQPSPAPLTLSAPASSA 394


>AK024269-1|BAB14867.1|  547|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14207 fis, clone NT2RP3003185, weakly similar to
           TROPOMYOSIN 1, FUSION PROTEIN 33. ).
          Length = 547

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 10/20 (50%), Positives = 16/20 (80%)

Query: 41  SPKNRPSPAPMYITAPGAVA 60
           SP ++PSPAP+ ++AP + A
Sbjct: 375 SPHHQPSPAPLTLSAPASSA 394


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.313    0.126    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,118,056
Number of Sequences: 224733
Number of extensions: 136326
Number of successful extensions: 292
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 282
Number of HSP's gapped (non-prelim): 10
length of query: 60
length of database: 73,234,838
effective HSP length: 40
effective length of query: 20
effective length of database: 64,245,518
effective search space: 1284910360
effective search space used: 1284910360
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 57 (27.1 bits)