GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000041-TA|BGIBMGA000041-PA|undefined
         (60 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    22   0.55 
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    21   1.3  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    21   1.3  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    19   3.9  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    18   6.8  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        18   6.8  

>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 21.8 bits (44), Expect = 0.55
 Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 2/23 (8%)

Query: 36  SNRAYSP--KNRPSPAPMYITAP 56
           S+R++ P  K++P PAP    AP
Sbjct: 246 SSRSHQPATKSKPRPAPASRNAP 268


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 20.6 bits (41), Expect = 1.3
 Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 1/27 (3%)

Query: 33  DWASNRAYSPKNRPSPAPMYITAPGAV 59
           +W    +Y  +  P PA  +  AP A+
Sbjct: 125 EWIKKTSYQSQPNPEPAD-FADAPDAI 150


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 20.6 bits (41), Expect = 1.3
 Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 1/27 (3%)

Query: 33  DWASNRAYSPKNRPSPAPMYITAPGAV 59
           +W    +Y  +  P PA  +  AP A+
Sbjct: 125 EWIKKTSYQSQPNPEPAD-FADAPDAI 150


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 19.0 bits (37), Expect = 3.9
 Identities = 8/17 (47%), Positives = 10/17 (58%), Gaps = 4/17 (23%)

Query: 40  YSPKNRPS----PAPMY 52
           Y+PK  P     PAP+Y
Sbjct: 241 YTPKRNPKEADYPAPLY 257


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 18.2 bits (35), Expect = 6.8
 Identities = 6/14 (42%), Positives = 9/14 (64%)

Query: 39  AYSPKNRPSPAPMY 52
           A +PK    P+P+Y
Sbjct: 252 ARNPKEADYPSPLY 265


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 18.2 bits (35), Expect = 6.8
 Identities = 6/11 (54%), Positives = 8/11 (72%)

Query: 46  PSPAPMYITAP 56
           PSP P + T+P
Sbjct: 324 PSPVPGHSTSP 334


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.126    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8722
Number of Sequences: 317
Number of extensions: 205
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 60
length of database: 114,650
effective HSP length: 40
effective length of query: 20
effective length of database: 101,970
effective search space:  2039400
effective search space used:  2039400
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.3 bits)
S2: 34 (17.8 bits)