GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000041-TA|BGIBMGA000041-PA|undefined
         (60 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    22   8.4  
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    22   8.4  

>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 22.2 bits (45), Expect = 8.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 39  AYSPKNRPSPAPMYITAPGA 58
           A +P   P+PAP   +AP A
Sbjct: 119 AAAPAATPAPAPAQTSAPAA 138


>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 22.2 bits (45), Expect = 8.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 35  ASNRAYSPKNRPSPAPMYI 53
           + N A S  N PS  P+YI
Sbjct: 177 SQNPAISTSNLPSTTPLYI 195


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.126    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,230
Number of Sequences: 5004
Number of extensions: 2862
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 2
length of query: 60
length of database: 2,362,478
effective HSP length: 41
effective length of query: 19
effective length of database: 2,157,314
effective search space: 40988966
effective search space used: 40988966
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 45 (22.2 bits)