GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000041-TA|BGIBMGA000041-PA|undefined
         (60 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0169 + 11420115-11420163,11420922-11421041,11421938-114220...    26   3.3  
04_04_0638 - 26877640-26877825,26877954-26878160,26878866-268789...    25   7.7  

>10_06_0169 +
           11420115-11420163,11420922-11421041,11421938-11422053,
           11422125-11422213,11422413-11422455,11423296-11423440,
           11423581-11423688,11423767-11424086,11424255-11424671,
           11424776-11425470,11425564-11426107,11426338-11426682,
           11426799-11426909
          Length = 1033

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 38  RAYSPKNRPSPAPMYITAPGAVA 60
           R YSP ++P   P Y+T    +A
Sbjct: 508 RCYSPPHKPGRVPFYVTCSNRLA 530


>04_04_0638 -
           26877640-26877825,26877954-26878160,26878866-26878925,
           26879229-26879435,26879501-26879549,26880138-26880337,
           26880425-26880510,26880585-26880741,26880920-26881084,
           26881817-26882053
          Length = 517

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/18 (55%), Positives = 10/18 (55%)

Query: 40  YSPKNRPSPAPMYITAPG 57
           Y P   PSP P YIT  G
Sbjct: 254 YCPGEEPSPPPEYITCLG 271


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.313    0.126    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,148,671
Number of Sequences: 37544
Number of extensions: 23583
Number of successful extensions: 74
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72
Number of HSP's gapped (non-prelim): 2
length of query: 60
length of database: 14,793,348
effective HSP length: 40
effective length of query: 20
effective length of database: 13,291,588
effective search space: 265831760
effective search space used: 265831760
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 52 (25.0 bits)