GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000041-TA|BGIBMGA000041-PA|undefined
         (60 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    19   6.2  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    19   6.2  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    18   8.2  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6
          variant 2 precursor protein.
          Length = 94

 Score = 18.6 bits (36), Expect = 6.2
 Identities = 8/20 (40%), Positives = 10/20 (50%)

Query: 40 YSPKNRPSPAPMYITAPGAV 59
          + P   P P  + I APG V
Sbjct: 53 FCPNVVPKPLCIKICAPGCV 72


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6
          variant 1 precursor protein.
          Length = 92

 Score = 18.6 bits (36), Expect = 6.2
 Identities = 8/20 (40%), Positives = 10/20 (50%)

Query: 40 YSPKNRPSPAPMYITAPGAV 59
          + P   P P  + I APG V
Sbjct: 53 FCPNVVPKPLCIKICAPGCV 72


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 18.2 bits (35), Expect = 8.2
 Identities = 8/19 (42%), Positives = 9/19 (47%)

Query: 32  KDWASNRAYSPKNRPSPAP 50
           K + S     P NR  PAP
Sbjct: 377 KCFKSRTNLDPSNRKLPAP 395


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.126    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,439
Number of Sequences: 429
Number of extensions: 391
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 60
length of database: 140,377
effective HSP length: 40
effective length of query: 20
effective length of database: 123,217
effective search space:  2464340
effective search space used:  2464340
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.8 bits)
S2: 35 (18.2 bits)