Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000040-TA|BGIBMGA000040-PA|undefined
         (142 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc...    26   1.9  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    24   7.8  

>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 59  NNNETIKTNLFSLVPLDVETINSLGVKKTVRDVKPRGFLSEWAEFAKYLMRLVQDF 114
           N  E IK N+F  +   V  ++S G+    RD+KP  FL   +E    L+  + DF
Sbjct: 109 NQPEMIK-NIFLQIIDGVAHLHSHGIYH--RDLKPENFLLSLSEDGSELVVKISDF 161


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 13/33 (39%), Positives = 16/33 (48%)

Query: 56  FGDNNNETIKTNLFSLVPLDVETINSLGVKKTV 88
           F  N N  IK++ FSL       + SL  K TV
Sbjct: 411 FAGNKNPQIKSSCFSLFSRSFSNMTSLPSKFTV 443


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.137    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 630,751
Number of Sequences: 5004
Number of extensions: 25513
Number of successful extensions: 58
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 57
Number of HSP's gapped (non-prelim): 2
length of query: 142
length of database: 2,362,478
effective HSP length: 66
effective length of query: 76
effective length of database: 2,032,214
effective search space: 154448264
effective search space used: 154448264
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 50 (24.2 bits)