Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000040-TA|BGIBMGA000040-PA|undefined
         (142 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC001891-1|AAH01891.1|  423|Homo sapiens COP9 constitutive photo...    34   0.20 
AF098109-1|AAD41247.1|  423|Homo sapiens COP9 complex subunit 3 ...    34   0.20 
AF031647-1|AAC14197.1|  403|Homo sapiens JAB1-containing signalo...    34   0.20 
AL353692-3|CAI16236.1| 5596|Homo sapiens MDN1, midasin homolog (...    29   7.6  
AL158813-2|CAI13203.1| 5596|Homo sapiens MDN1, midasin homolog (...    29   7.6  
AL096678-1|CAI42279.1| 5596|Homo sapiens MDN1, midasin homolog (...    29   7.6  
AF503925-1|AAM77722.1| 5596|Homo sapiens midasin protein.              29   7.6  

>BC001891-1|AAH01891.1|  423|Homo sapiens COP9 constitutive
           photomorphogenic homolog subunit 3 (Arabidopsis)
           protein.
          Length = 423

 Score = 33.9 bits (74), Expect = 0.20
 Identities = 18/61 (29%), Positives = 33/61 (54%)

Query: 53  ETFFGDNNNETIKTNLFSLVPLDVETINSLGVKKTVRDVKPRGFLSEWAEFAKYLMRLVQ 112
           ETF  DNN   +K  L SL   +++ +    +  +++D+  R  LS   E  KY++ +++
Sbjct: 284 ETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIE 343

Query: 113 D 113
           D
Sbjct: 344 D 344


>AF098109-1|AAD41247.1|  423|Homo sapiens COP9 complex subunit 3
           protein.
          Length = 423

 Score = 33.9 bits (74), Expect = 0.20
 Identities = 18/61 (29%), Positives = 33/61 (54%)

Query: 53  ETFFGDNNNETIKTNLFSLVPLDVETINSLGVKKTVRDVKPRGFLSEWAEFAKYLMRLVQ 112
           ETF  DNN   +K  L SL   +++ +    +  +++D+  R  LS   E  KY++ +++
Sbjct: 284 ETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIE 343

Query: 113 D 113
           D
Sbjct: 344 D 344


>AF031647-1|AAC14197.1|  403|Homo sapiens JAB1-containing
           signalosome subunit 3 protein.
          Length = 403

 Score = 33.9 bits (74), Expect = 0.20
 Identities = 18/61 (29%), Positives = 33/61 (54%)

Query: 53  ETFFGDNNNETIKTNLFSLVPLDVETINSLGVKKTVRDVKPRGFLSEWAEFAKYLMRLVQ 112
           ETF  DNN   +K  L SL   +++ +    +  +++D+  R  LS   E  KY++ +++
Sbjct: 264 ETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIE 323

Query: 113 D 113
           D
Sbjct: 324 D 324


>AL353692-3|CAI16236.1| 5596|Homo sapiens MDN1, midasin homolog
            (yeast) protein.
          Length = 5596

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 44   KYKGLKVIKETFFGDNNNETIKTNLFSLVPLDVE 77
            K K + V K+ F G N+N  + T LF + P DV+
Sbjct: 1987 KKKVIAVFKDVF-GSNSNPYMGTRLFRITPYDVQ 2019


>AL158813-2|CAI13203.1| 5596|Homo sapiens MDN1, midasin homolog
            (yeast) protein.
          Length = 5596

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 44   KYKGLKVIKETFFGDNNNETIKTNLFSLVPLDVE 77
            K K + V K+ F G N+N  + T LF + P DV+
Sbjct: 1987 KKKVIAVFKDVF-GSNSNPYMGTRLFRITPYDVQ 2019


>AL096678-1|CAI42279.1| 5596|Homo sapiens MDN1, midasin homolog
            (yeast) protein.
          Length = 5596

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 44   KYKGLKVIKETFFGDNNNETIKTNLFSLVPLDVE 77
            K K + V K+ F G N+N  + T LF + P DV+
Sbjct: 1987 KKKVIAVFKDVF-GSNSNPYMGTRLFRITPYDVQ 2019


>AF503925-1|AAM77722.1| 5596|Homo sapiens midasin protein.
          Length = 5596

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 44   KYKGLKVIKETFFGDNNNETIKTNLFSLVPLDVE 77
            K K + V K+ F G N+N  + T LF + P DV+
Sbjct: 1987 KKKVIAVFKDVF-GSNSNPYMGTRLFRITPYDVQ 2019


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.319    0.137    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,912,448
Number of Sequences: 224733
Number of extensions: 708319
Number of successful extensions: 1082
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1079
Number of HSP's gapped (non-prelim): 7
length of query: 142
length of database: 73,234,838
effective HSP length: 83
effective length of query: 59
effective length of database: 54,581,999
effective search space: 3220337941
effective search space used: 3220337941
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)