GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000040-TA|BGIBMGA000040-PA|undefined
         (142 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1173 + 26692030-26692379,26692478-26692565,26693309-266934...    29   1.4  
12_02_1172 + 26680246-26680595,26680693-26680780,26681478-266816...    28   2.5  
11_01_0779 + 6518556-6518601,6519825-6519967,6520091-6520114,652...    28   3.3  
10_08_0195 - 15652147-15652308,15652740-15652838,15652996-15653064     27   4.4  
12_01_0370 - 2835071-2835285,2835427-2836045                           27   7.6  
02_03_0302 + 17490176-17490888,17490927-17491302                       27   7.6  

>12_02_1173 +
           26692030-26692379,26692478-26692565,26693309-26693436,
           26693514-26693705,26693810-26694012,26694127-26694290,
           26694419-26694499,26694592-26694758,26694839-26694944,
           26695097-26695347,26695388-26695508,26695594-26695722,
           26695813-26696181
          Length = 782

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 6/71 (8%)

Query: 47  GLKVIKETFFGDNNNETIKTNLFSLVPLDVETINSLGVKKTVRDVKPRGFLSEWAEFAKY 106
           GL V+ ET+F D   E+ KT L SL  +     + +   KT+  VK  GF S      KY
Sbjct: 235 GLNVLIETYFADIPAESYKT-LTSLNSVTAYGFDLIRGSKTLDLVKSAGFPS-----GKY 288

Query: 107 LMRLVQDFLNV 117
           L   V D  N+
Sbjct: 289 LFAGVVDGRNI 299


>12_02_1172 +
           26680246-26680595,26680693-26680780,26681478-26681605,
           26681683-26681874,26681979-26682181,26682296-26682459,
           26682597-26682677,26682770-26682936,26683015-26683120,
           26683269-26683519,26683610-26683682,26683751-26683879,
           26683963-26684331
          Length = 766

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 6/71 (8%)

Query: 47  GLKVIKETFFGDNNNETIKTNLFSLVPLDVETINSLGVKKTVRDVKPRGFLSEWAEFAKY 106
           GL V+ ET+F D   E+ KT L SL  +     + +   KT+  +K  GF S      KY
Sbjct: 235 GLNVLIETYFADIPAESYKT-LTSLNSVTAYGFDLIRGAKTLDLIKSAGFPS-----GKY 288

Query: 107 LMRLVQDFLNV 117
           L   V D  N+
Sbjct: 289 LFAGVVDGRNI 299


>11_01_0779 +
           6518556-6518601,6519825-6519967,6520091-6520114,
           6520140-6520286,6521957-6522142,6522232-6522490,
           6522738-6522969,6523081-6523231,6523322-6523499,
           6523916-6524191,6524414-6524642,6524754-6524904,
           6525013-6525192
          Length = 733

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 12/33 (36%), Positives = 21/33 (63%)

Query: 65  KTNLFSLVPLDVETINSLGVKKTVRDVKPRGFL 97
           K+++FSL  L +E +  L V  + +DV  +GF+
Sbjct: 640 KSDIFSLGVLIIEIVTGLKVNSSSQDVTSKGFI 672


>10_08_0195 - 15652147-15652308,15652740-15652838,15652996-15653064
          Length = 109

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 11/43 (25%), Positives = 21/43 (48%)

Query: 66  TNLFSLVPLDVETINSLGVKKTVRDVKPRGFLSEWAEFAKYLM 108
           T+L  L  L ++ + +L +     DV+P    ++W     YL+
Sbjct: 24  TSLQELTTLGIKHVENLAIPSVRNDVRPAKLKNDWGLLVPYLI 66


>12_01_0370 - 2835071-2835285,2835427-2836045
          Length = 277

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 13/42 (30%), Positives = 20/42 (47%)

Query: 16  SRSNVTEDGYLRYVKDSCFVKGEAISCVKYKGLKVIKETFFG 57
           S+S V   G+ RYVK+     G+ +   + +GL      F G
Sbjct: 96  SQSYVLTKGWSRYVKEKRLDAGDVVHFERVRGLGAADRLFIG 137


>02_03_0302 + 17490176-17490888,17490927-17491302
          Length = 362

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 18/82 (21%), Positives = 41/82 (50%), Gaps = 3/82 (3%)

Query: 40  ISCVKYKGLKVIKETFFGD-NNNETIKTNLFSLVPLDVETINSLGVKKTVRDVK-PRGFL 97
           I C  + G ++++ T      NN+ I+   + ++ + ++      V   ++++   +G  
Sbjct: 230 IECGTHMG-RIVRATILPRLGNNDDIRGVAWHVIDVIIQGRQFDIVSLMMQEIAISKGTF 288

Query: 98  SEWAEFAKYLMRLVQDFLNVKG 119
           ++   +A Y+MRL+QD L   G
Sbjct: 289 TQGIYYAPYIMRLIQDKLGAAG 310


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.137    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,789,424
Number of Sequences: 37544
Number of extensions: 142139
Number of successful extensions: 293
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 290
Number of HSP's gapped (non-prelim): 6
length of query: 142
length of database: 14,793,348
effective HSP length: 75
effective length of query: 67
effective length of database: 11,977,548
effective search space: 802495716
effective search space used: 802495716
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)