GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000040-TA|BGIBMGA000040-PA|undefined
         (142 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1738| Best HMM Match : p450 (HMM E-Value=0)                         29   1.9  
SB_19200| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.5  
SB_59709| Best HMM Match : p450 (HMM E-Value=8e-16)                    27   5.9  
SB_13432| Best HMM Match : Reticulon (HMM E-Value=5.1e-16)             27   5.9  
SB_27777| Best HMM Match : WSC (HMM E-Value=0.44)                      27   7.9  
SB_1416| Best HMM Match : RVT_1 (HMM E-Value=1.8e-37)                  27   7.9  
SB_51031| Best HMM Match : RVT_1 (HMM E-Value=1.8e-37)                 27   7.9  
SB_39048| Best HMM Match : RVT_1 (HMM E-Value=1.9e-23)                 27   7.9  

>SB_1738| Best HMM Match : p450 (HMM E-Value=0)
          Length = 484

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 15/38 (39%), Positives = 20/38 (52%)

Query: 52  KETFFGDNNNETIKTNLFSLVPLDVETINSLGVKKTVR 89
           K   F      T   NLFSL  LDV TI++ GV+  ++
Sbjct: 153 KMASFAATGESTDCVNLFSLFALDVITISAFGVETDIQ 190


>SB_19200| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 852

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 15/62 (24%), Positives = 32/62 (51%)

Query: 52  KETFFGDNNNETIKTNLFSLVPLDVETINSLGVKKTVRDVKPRGFLSEWAEFAKYLMRLV 111
           +ETF  DNN   +K    S+   ++  +    +  ++ D+  R  LS   E  ++++R++
Sbjct: 685 QETFTRDNNMGLVKQVCSSVYKKNILRLTKTFLTLSLSDMANRVQLSSPKEAEEHILRMI 744

Query: 112 QD 113
           +D
Sbjct: 745 ED 746


>SB_59709| Best HMM Match : p450 (HMM E-Value=8e-16)
          Length = 377

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 12/23 (52%), Positives = 17/23 (73%)

Query: 67 NLFSLVPLDVETINSLGVKKTVR 89
          NLFSL  LDV TI++ GV+  ++
Sbjct: 72 NLFSLFALDVITISAFGVETDIQ 94


>SB_13432| Best HMM Match : Reticulon (HMM E-Value=5.1e-16)
          Length = 621

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 116 NVKGLKVEIPEGARTVEEETADDGE 140
           NV+G+  +IP+G+R  EE   D  E
Sbjct: 249 NVQGITCDIPQGSRRPEEGKVDSEE 273


>SB_27777| Best HMM Match : WSC (HMM E-Value=0.44)
          Length = 216

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 41  SCVKYKGLKVIKETFFGDNNNETIKTNLFS 70
           S  + +G K+    F+G+NN ++I T L +
Sbjct: 185 SLSRQRGYKIFSVQFYGENNTKSITTALLT 214


>SB_1416| Best HMM Match : RVT_1 (HMM E-Value=1.8e-37)
          Length = 857

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)

Query: 114 FLNVKGLKVEIPEGARTVEEETA 136
           FLN   +K+E+PEGA+     TA
Sbjct: 347 FLNCAPVKIELPEGAQPFHVNTA 369


>SB_51031| Best HMM Match : RVT_1 (HMM E-Value=1.8e-37)
          Length = 858

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)

Query: 114 FLNVKGLKVEIPEGARTVEEETA 136
           FLN   +K+E+PEGA+     TA
Sbjct: 348 FLNCAPVKIELPEGAQPFHVNTA 370


>SB_39048| Best HMM Match : RVT_1 (HMM E-Value=1.9e-23)
          Length = 1062

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)

Query: 114 FLNVKGLKVEIPEGARTVEEETA 136
           FLN   +K+E+PEGA+     TA
Sbjct: 567 FLNCAPVKIELPEGAQPYHVNTA 589


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.137    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,428,970
Number of Sequences: 59808
Number of extensions: 168039
Number of successful extensions: 374
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 366
Number of HSP's gapped (non-prelim): 8
length of query: 142
length of database: 16,821,457
effective HSP length: 75
effective length of query: 67
effective length of database: 12,335,857
effective search space: 826502419
effective search space used: 826502419
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)