GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000040-TA|BGIBMGA000040-PA|undefined
         (142 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT015251-1|AAT94480.1|  390|Drosophila melanogaster LP14110p pro...    39   0.002
AE014297-414|AAN13234.1|  390|Drosophila melanogaster CG1148-PB,...    39   0.002
AE014297-413|AAF51907.2|  390|Drosophila melanogaster CG1148-PA,...    39   0.002
BT003793-1|AAO41476.1| 1000|Drosophila melanogaster GH07384p pro...    27   9.5  
AY052104-1|AAK93528.1|  712|Drosophila melanogaster SD05186p pro...    27   9.5  
AE014297-129|AAF52107.1| 1105|Drosophila melanogaster CG1059-PA ...    27   9.5  

>BT015251-1|AAT94480.1|  390|Drosophila melanogaster LP14110p
           protein.
          Length = 390

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 4/104 (3%)

Query: 23  DGYLRYVKDSCFVKGEAISCVKYKGLKVIKETFFGDNNNETIKTNLFSLVPLDVETINSL 82
           D +L     +C + G+   C K + L    E FF D       ++   +V L      SL
Sbjct: 81  DPFLARTNSNC-LGGDLSECFKTQALNTFDEIFFKDQYK---LSDFARVVRLPETQQRSL 136

Query: 83  GVKKTVRDVKPRGFLSEWAEFAKYLMRLVQDFLNVKGLKVEIPE 126
             +      +PRG   EW +  KY +R  + F+    L+VE PE
Sbjct: 137 LQEPFEYSEEPRGDDDEWNQLLKYGLRRAERFIKSTALEVEWPE 180


>AE014297-414|AAN13234.1|  390|Drosophila melanogaster CG1148-PB,
           isoform B protein.
          Length = 390

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 4/104 (3%)

Query: 23  DGYLRYVKDSCFVKGEAISCVKYKGLKVIKETFFGDNNNETIKTNLFSLVPLDVETINSL 82
           D +L     +C + G+   C K + L    E FF D       ++   +V L      SL
Sbjct: 81  DPFLARTNSNC-LGGDLSECFKTQALNTFDEIFFKDQYK---LSDFARVVRLPETQQRSL 136

Query: 83  GVKKTVRDVKPRGFLSEWAEFAKYLMRLVQDFLNVKGLKVEIPE 126
             +      +PRG   EW +  KY +R  + F+    L+VE PE
Sbjct: 137 LQEPFEYSEEPRGDDDEWNQLLKYGLRRAERFIKSTALEVEWPE 180


>AE014297-413|AAF51907.2|  390|Drosophila melanogaster CG1148-PA,
           isoform A protein.
          Length = 390

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 4/104 (3%)

Query: 23  DGYLRYVKDSCFVKGEAISCVKYKGLKVIKETFFGDNNNETIKTNLFSLVPLDVETINSL 82
           D +L     +C + G+   C K + L    E FF D       ++   +V L      SL
Sbjct: 81  DPFLARTNSNC-LGGDLSECFKTQALNTFDEIFFKDQYK---LSDFARVVRLPETQQRSL 136

Query: 83  GVKKTVRDVKPRGFLSEWAEFAKYLMRLVQDFLNVKGLKVEIPE 126
             +      +PRG   EW +  KY +R  + F+    L+VE PE
Sbjct: 137 LQEPFEYSEEPRGDDDEWNQLLKYGLRRAERFIKSTALEVEWPE 180


>BT003793-1|AAO41476.1| 1000|Drosophila melanogaster GH07384p
           protein.
          Length = 1000

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 31  DSCFVKGEAISCVKYKGLKVIKETFFGD 58
           D   ++G+ I CV   GL V +E F GD
Sbjct: 550 DLRMLRGKTIECVSLIGLAVGREKFIGD 577


>AY052104-1|AAK93528.1|  712|Drosophila melanogaster SD05186p
           protein.
          Length = 712

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 31  DSCFVKGEAISCVKYKGLKVIKETFFGD 58
           D   ++G+ I CV   GL V +E F GD
Sbjct: 157 DLRMLRGKTIECVSLIGLAVGREKFIGD 184


>AE014297-129|AAF52107.1| 1105|Drosophila melanogaster CG1059-PA
           protein.
          Length = 1105

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 31  DSCFVKGEAISCVKYKGLKVIKETFFGD 58
           D   ++G+ I CV   GL V +E F GD
Sbjct: 550 DLRMLRGKTIECVSLIGLAVGREKFIGD 577


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.319    0.137    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,271,305
Number of Sequences: 52641
Number of extensions: 240150
Number of successful extensions: 610
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 604
Number of HSP's gapped (non-prelim): 6
length of query: 142
length of database: 24,830,863
effective HSP length: 78
effective length of query: 64
effective length of database: 20,724,865
effective search space: 1326391360
effective search space used: 1326391360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)